Public Data Portal - Specimen Record

 
 
 
 
 
Specimen Data Sequences Combined
  Record Details For SDP258009-15     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 14_UNE_SM_001 Museum ID:
  Field ID: 14_UNE_SM_001 Collection Code:
  Deposited In: University of New England
 

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  TAXONOMY:
  Phylum: Chordata Subfamily: Syngnathinae
  Class: Actinopterygii Genus: Syngnathus
  Order: Syngnathiformes Species: Syngnathus fuscus
  Family: Syngnathidae Subspecies:
  BIN (Cluster ID): BOLD:AAG5036
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: E-Vouchered:DNA/Tissue+Photo Reproduction:
  Tissue Descriptor: DNA Sex:
  Brief Note: Life Stage:
  Detailed Notes: ::meta:{"specimen":["Sophia Mayone"],"image":["Sophia Mayone"],"trace_run_site":["Generic Commercial Lab"],"trace_upload":["Sophia Mayone"],"sequencing_run_site":["Generic Commercial Lab"],"sequence_upload":["Sophia Mayone"]}::endMeta:5cm elongated body (long, very thin), dark brown with lighter colored head. Body is hexagonal until dorsal fin then 4 sided up to the end of the tail, one dorsal fin on top and a caudal (tail end) fin is rounded, no ventral fins.
 
  COLLECTION DATA:
  Country: United States Date Collected: 2014-08-04
  Province/State: Maine Collectors: S. Mayone
  Region/County: Saco River, Maine    
  Sector:    
  Exact Site: Freddie's Beach    
  Latitude: 43.4603 Elevation:
  Longitude: -70.3794 Elv. Accuracy:
  Coord. Source: Depth: 1 Meters
  Coord. Accuracy: 1 Meters Depth Accuracy :
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: SDP258009-15.COI-5P GenBank Accession: KT601626
  Last Updated: 2017-10-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 655 bp
 
CCTATATCTAGTATTTGGTGCATGAGCCGGAATAGTAGGTACTGCACTTAGTCTCCTCATTCGAGCGGAACTTAG
TCAACCGGGGGCCCTCCTAGGCGACGACCAGATTTACAATGTAATCGTTACGGCCCATGCTTTCGTTATAATTTT
CTTCATAGTTATACCCATCATAATTGGGGGTTTTGGTAACTGGTTAGTGCCTTTAATAATTGGAGCCCCAGATAT
AGCATTCCCTCGAATAAATAATATGAGCTTCTGACTACTACCCCCCTCCTTTCTGCTTCTACTTGCCTCTTCAGG
AGTGGAAGCAGGCGCGGGTACAGGGTGAACTGTCTACCCCCCGCTCTCAGGTAATTTAGCCCATCAAGGAGCTTC
TGTAGACCTTACAATTTTCTCTTTGCACCTAGCGGGGGTATCCTCGATCCTCGGAGCTATCAACTTCATCACCAC
TATTATTAATATAAAACCCCCTTCAATCTCTCAATACCAGACACCCTTATTTGTTTGGGCTGTTCTCATCACTGC
CGTTCTGCTTCTTCTCTCCCTGCCTGTCCTAGCAGCTGGTATTACTATGTTATTAACTGACCGTAATTTAAACAC
AACTTTCTTTGACCCCGCAGGAGGGGGGGACCCTATTCTCTACCAACATCTCTTC
  Amino Acids:  
 
LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDM
AFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLSGNLAHQGASVDLTIFSLHLAGVSSILGAINFITT
IINMKPPSISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLF
  Illustrative Barcode:
 
   

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit
  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
610 C_FishF1t1 / C_FishR1t1
M13R
Reverse high qual 2014-08-07  
602 C_FishF1t1 / C_FishR1t1
M13F-20
Forward high qual 2014-08-07  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution Share-Alike (2015)
  License Holder:
Unspecified, University of New England

Comments

Add a Comment

No Comment made
More...

Tags

No tags
Edit

Collection Site:

  Attribution:
Specimen Depository: University of New England
Sequencing Center:
Photography: S. Mayone, University of New England
Collectors: S. Mayone
Specimen Identification: Student
Project Manager: Student Portal Manager
Sequencing Support: