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Specimen Data Sequences Combined
  Record Details For LOCB717-06     Back to Search: Records
  IDENTIFIERS:
  Sample ID: 06-BLLOC-717 Museum ID:
  Field ID: 06-BLLOC-717 Collection Code:
  Deposited In: Centre for Biodiversity Genomics
 

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  TAXONOMY:
  Phylum: Arthropoda Subfamily: Noctuinae
  Class: Insecta Genus: Orthosia
  Order: Lepidoptera Species: Orthosia transparens
  Family: Noctuidae Subspecies:
  BIN (Cluster ID): BOLD:AAB8764
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: Reproduction:
  Tissue Descriptor: Sex:
  Brief Note: Life Stage:
  Detailed Notes:
 
  COLLECTION DATA:
  Country: United States Date Collected: 2006-03-26
  Province/State: California Collectors: N. Bloomfield
  Region/County: San Diego County    
  Sector:    
  Exact Site: Torrey Pines State Natural Reserve, Mesa    
  Latitude: 32.54 Elevation:
  Longitude: -117.14 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: Depth Accuracy :
 
  PUBLICATIONS:
  Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: LOCB717-06.COI-5P GenBank Accession:
  Last Updated: 2024-04-16 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 658 bp
 
AACATTATATTTTATTTTTGGTATTTGAGCTGGAATAGTTGGAACTTCATTAAGATTATTAATTCGAGCTGAATT
AGGAAACCCTGGATCTTTAATTGGAGATGATCAAATTTATAATACTATTGTTACAGCACATGCTTTTATTATAAT
TTTTTTTATAGTTATACCTATTATAATTGGAGGATTTGGCAATTGACTTGTCCCATTAATATTAGGAGCCCCTGA
TATAGCTTTCCCCCGAATAAATAATATAAGTTTCTGACTTCTTCCCCCCTCATTAACTTTATTAATTTCAAGAAG
AGTTGTAGAAAATGGAGCAGGAACAGGATGAACGGTGTACCCTCCCCTTTCATCTAATATTGCTCACGGAGGAAG
ATCTGTAGATTTAGCTATTTTTTCTTTACACTTAGCTGGAATTTCTTCTATTTTAGGAGCTATTAATTTTATTAC
TACAATTATTAATATACGATTAAATAATTTATCTTTTGATCAAATACCTTTATTCATTTGATCTGTAGGTATTAC
AGCATTTTTACTATTATTATCTTTACCTGTATTAGCTGGAGCCATTACTATACTTTTAACAGATCGAAATTTAAA
TACATCATTTTTTGACCCTGCTGGAGGAGGAGACCCAATTTTATACCAACATTTATTT
  Amino Acids:  
 
TLYFIFGIWAGMVGTSLSLLIRAELGNPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPD
MAFPRMNNMSFWLLPPSLTLLISSSVVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFIT
TIINMRLNNLSFDQMPLFIWSVGITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLF
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
624 LepF1 / LepR1
LepF1
Forward high qual 2006-06-06  
620 LepF1 / LepR1
LepR1
Reverse med qual 2006-06-06  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution (2010)
  License Holder:
CBG Photography Group, Centre for Biodiversity Genomics

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Collection Site:

  Attribution:
Specimen Depository: Centre for Biodiversity Genomics
Sequencing Center:
Photography: CBG Photography Group, Centre for Biodiversity Genomics
Collectors: N. Bloomfield
Specimen Identification:
Project Manager: CBG Project Management Team
Sequencing Support: