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Specimen Data Sequences Combined
  Record Details For CAZUL197-17     Back to Search: Records
  IDENTIFIERS:
  Sample ID: CH683-A07 Museum ID: ECO-CH-Z
  Field ID: CA170127RPLV300TL3 Collection Code:
  Deposited In: El Colegio de la Frontera Sur, Unidad Chetumal
 

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  TAXONOMY:
  Phylum: Arthropoda Subfamily: Cyclopinae
  Class: Copepoda Genus: Thermocyclops
  Order: Cyclopoida Species: Thermocyclops inversus
  Family: Cyclopidae Subspecies:
  BIN (Cluster ID): BOLD:AAB4353
  * Barcode Index Numbers(BIN): cluster barcode sequences to create OTUs that closely reflect species groupings
  SPECIMEN DETAILS:
  Voucher Status: Reproduction: S
  Tissue Descriptor: Sex: F
  Brief Note: Life Stage:
  Detailed Notes:
 
  COLLECTION DATA:
  Country: Mexico Date Collected: 2017-01-27
  Province/State: Quintana Roo Collectors: Lucia Montes-Ortiz, Manuel Elias-Gutierrez & Jose Angel Cohuo-Colli
  Region/County: Bacalar    
  Sector:    
  Exact Site: Cenote Azul    
  Latitude: 18.6471 Elevation:
  Longitude: -88.4129 Elv. Accuracy:
  Coord. Source: Depth:
  Coord. Accuracy: Depth Accuracy :
 
  PUBLICATIONS:
  Montes-Ortiz, Lucia. Elías-Gutiérrez, Manuel. Faunistic survey of the zooplankton community in an oligotrophic sinkhole, Cenote Azul (Quintana Roo, Mexico), using different sampling methods, and documented with DNA barcodes Journal of Limnology 2018-06-21;77(3):428-440 (PDF)
 
 

  SEQUENCE: COI-5P   [Funding Source: N/A]
  Sequence ID: CAZUL197-17.COI-5P GenBank Accession: MT888243
  Last Updated: 2024-09-24 Genome: Mitochondrial
  Locus: Cytochrome Oxidase Subunit 1 5' Region
  Nucleotides: 650 bp
 
ACTTTTTATTTACTAGCCGGGGCAGGCTCGGGAATGATTGGCACAGGCCTCAGAGTAATTATTGGTTTAGAATTA
GGGCAACCTGGGTCTTTTATAGGTGACGACCAAATTTACAATGTTGTAGTTACAGCACATGCTTTTATTATAATT
TTTTTTATGGTTATACCTATTTTAATTGGGGGGTTTGGTAATTGATTAGTTCCATTAATATTAGGATCCCCAGAT
ATAGCTTTCCCTCGCATAAATAACATGAGATTTTGATTTTTAGTCCCAGCTTTGTTTATACTACTGATAAGATCT
TTAGTAGAAAGAGGAGCTGGAACAGGATGAACAGTATATCCCCCTTTAAGAAGAAATGTTTCTCACTCTGGGGCA
TCTGTCGATTATGCTATTTTTTCATTGCACTTAGCAGGAGTTTCTTCTATTTTAGGAGCAGTAAATTTTATTAGA
ACTGTTGGCAATATACGAACATTCGGTGTGTTTTTAGATCGAGTTCCTTTGTTTGCTTGAGCTGTTTTAATTACT
GCTATTTTATTATTATTGTCTTTACCTGTTTTAGCGGGGGCCATTACAATACTTTTAACAGATCGTAACTTAAAC
ACTTCCTTTTATGACCCAAGAGGAGGGGGAGACCCTATTTTATATCAACA
  Amino Acids:  
 
TFYLLAGAGSGMIGTGLSVIIGLELGQPGSFMGDDQIYNVVVTAHAFIMIFFMVMPILIGGFGNWLVPLMLGSPD
MAFPRMNNMSFWFLVPALFMLLMSSLVESGAGTGWTVYPPLSSNVSHSGASVDYAIFSLHLAGVSSILGAVNFIS
TVGNMRTFGVFLDRVPLFAWAVLITAILLLLSLPVLAGAITMLLTDRNLNTSFYDPSGGGDPILYQX
  Illustrative Barcode:
 
   

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  ELECTROPHEROGRAM TRACE FILES: COI-5P
  Length Pcr Primers Seq Primer Read Status Run Date  
597 ZplankF1_t1 / ZplankR1_t1
M13R
Reverse low qual 2017-05-05  
533 ZplankF1_t1 / ZplankR1_t1
M13F
Forward high qual 2017-05-05  
 
Generated using the BOLD API

													
  Specimen Images:
  License:
CreativeCommons - Attribution (2017)
  License Holder:
Lucia Montes-Ortiz, El Colegio de la Frontera Sur, Unidad Chetumal

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Collection Site:

  Attribution:
Specimen Depository: El Colegio de la Frontera Sur, Unidad Chetumal
Sequencing Center:
Photography: Lucia Montes-Ortiz, El Colegio de la Frontera Sur, Unidad Chetumal
Collectors: Lucia Montes-Ortiz, Manuel Elias-Gutierrez & Jose Angel Cohuo-Colli
Specimen Identification: Lucia Montes Ortiz
Project Manager: Manuel Elias-Gutierrez
Sequencing Support: