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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Leah A. Lewis, David E. Richardson, Evgeny V. Zakharov, Robert Hanner Integrating DNA Barcoding of Fish Eggs into Ichthyoplankton Monitoring Programs Fishery Bulletin 2016-02-05;114(2):153-165
Günther, Babett; Michael J. Raupach; Thomas Knebelsberger Full-length and mini-length DNA barcoding for the identification of seafood commercially traded in Germany Food Control 2016-10-16;73(Part B):922–929 (PDF)
M. R. McCusker, D. Denti, L. Van Guelpen, E. Kenchington and P. Bentzen Barcoding Atlantic Canada's commonly encountered marine fishes Molecular Ecology Resources 2012-12-17;13(2):177-188 (PDF)
THOMAS KNEBELSBERGER, MONICA LANDI, HERMANN NEUMANN,
MATTHIAS KLOPPMANN, ANNE F. SELL, PATRICK D. CAMPBELL, SILKE LAAKMANN,
MICHAEL J. RAUPACH, GARY R. CARVALHO and FILIPE O. COSTA A reliable DNA barcode reference library for the identification of the North European shelf fish fauna Molecular Ecology Resources 2014-03-12;14(5):1060-1071 (PDF)
M. Y. Deli Antoni, M. González-Castro and J. M. Díaz de
Astarloa New tools (DNA barcoding), old hypothesis: the case of the taxonomic identity of the Argentine hakes (Actinopterygii: Merluccius) Journal of Fish Biology 2015-08-04;87(1):783-793 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [25]
United Kingdom - [148]
United States - [38]
Atlantic Ocean - [22]
Norway - [4]
North Sea - [54]
Germany - [8]
Spain - [2]
Iceland - [1]
Greenland - [18]
Ireland - [54]
France - [88]
Sweden - [2]
North Atlantic Ocean - [1]
Italy - [21]
Denmark - [1]
China - [1]
DATA MANAGERS:
Public Data:
Private Data:
Nataly Ivanova - [47] Sujeevan Ratnasingham - [315] Ramya Manjunath - [2] Sven Rossel - [41] Student Portal Manager - [2] Dirk Steinke - [10] Babett Guenther - [4] Danielle Bourque - [1] Agnes Dettai - [88] Sharon A. Appleyard - [5] Paul Bentzen - [16] Thomas Knebelsberger - [12] Jan Y Poulsen - [1] Arild Johnsen - [1] Filipe Costa - [3] Andrew C. Bentley - [1]
David E. Richardson - [1] Andrew M. Griffiths - [193] Matthew RJ Morris - [3] Amy C. Driskell - [6] Amanda M. Naaum - [7] Tyler Zemlak - [5] Robert Wilson - [3] Sofie Derycke - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
SCFAC027-05 {Gadus morhua}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Centre for Biodiversity Genomics, Informatics Department - [3]
Cornell University - [1]
Dalhousie University - [16]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [57]
Flanders Research Institute for Agriculture, Fisheries and Food - [1]
Mined from GenBank, NCBI - [317]
Museum National d'Histoire Naturelle, Paris - [88]
NOAA, Northeast Fisheries Science Center - [44]
NOAA, Northeast Fisheries Science Center, Narragansett Laboratory - [1]
Northeast Fisheries Science Center, Narragansett Laboratory - [3]
Research Collection of Robert Hanner - [7]
Smithsonian Institution - [4]
Smithsonian Institution, National Museum of Natural History - [9]
University of Bergen, Natural History Collections - [4]
University of Bergen, Zoological Museum - [7]
University of Guelph - [1]
University of Kansas, Biodiversity Research Center - [1]
University of New England - [2]
University of Oslo, Natural History Museum - [1]
University of Salford, Manchester - [193]
Sequencing Centers:
Bangor University - [1] Canadian Centre for DNA Barcoding - [3] Centre for Biodiversity Genomics - [98] Flanders Research Institute for Agriculture, Fisheries and Food - [1] GATC Biotech AG - [74] Generic Commercial Labs - [2] Smithsonian Institution, Laboratories of Analytical Biology - [6] University of Guelph - [1]
Photography:
Angela Cicia - [2] Arve Lynghammar - [7] CBG Photography Group - [6] David E. Richardson - [26] Fishlabel Project - [13] Hans Hillewaert - [1] I. Byrkjedal - [3] Katrin Marancik - [1] Leah Lewis - [21] LifeScanner User - [5] Thomas Knebelsberger - [12]
Collectors:
Angela Cica - [1] Angela Cicia - [1] Arild Johnsen - [1] B - [1] Babett Guenther - [1] Babett Guenther/ Lena Albers - [3] Becky Anderson - [1] C. Bourbonnais-Boyce - [4] Charlotte Artuso - [1] Cynthia Bourbonnais-Boyce - [1] Daniel Osah - [1] David Richardson - [26] Diane Archambault - [1] Dr. Andrew Griffiths - [139] E - [1] Fish & Chips Consortium - [5] Fishlabel collector 1 - [1] Fishlabel collector 12 - [1] Fishlabel collector 13 - [2] Fishlabel collector 14 - [2] Fishlabel collector 15 - [1] Fishlabel collector 16 - [1] Fishlabel collector 18 - [1] Fishlabel collector 2 - [16] Fishlabel collector 20 - [1] Fishlabel collector 23 - [4] Fishlabel collector 25 - [2] Fishlabel collector 26 - [1] Fishlabel collector 28 - [1] Fishlabel collector 29 - [1] Fishlabel collector 30 - [1] Fishlabel collector 31 - [1] Fishlabel collector 34 - [2] Fishlabel collector 35 - [2] Fishlabel collector 37 - [1] Fishlabel collector 39 - [1] Fishlabel collector 4 - [1] Fishlabel collector 40 - [3] Fishlabel collector 41 - [1] Fishlabel collector 44 - [6] Fishlabel collector 47 - [2] Fishlabel collector 7 - [18] Fishlabel collector 8 - [1] Fishlabel collector 9 - [1] G Yearsley (CSIRO) - [5] Hans Hillewaert - [1] Heath Stone - [3] Hermann Neumann - [11] Jamie Skriver - [1] Jan Y. Poulsen - [1] Jon A - [1] M & Delling - [1] Marc Shorten - [54] Matthew Morris - [1] Moira S.S. - [1] Moore - [1] NEAMAP Survey - [1] NEAMAP Trawl Survey - [2] NEFSC - [1] Nelson High School - [1] Niklas Tysklind - [3] Noren - [1] Northeast Fisheries Science Center - [3] Peter Chase NOAA - [2] Sjolin - [1] Stephen Clifford - [1] Terra eco collector 10 - [1] Terra eco collector 12 - [1] Terra eco collector 13 - [1] Terra eco collector 19 - [1] Terra eco collector 23 - [1] Terra eco collector 29 - [1] Terra eco collector 39 - [1] Terra eco collector 4 - [1] Terra eco collector 43 - [1] Terra eco collector 46 - [1] Terra eco collector 9 - [2] Thomas Knebelsberger - [1] Tom Hurlbut - [1] Victoria Stevenson - [1] William MacEachern - [2] Willy E. Bemis - [1]
Specimen Identification:
Agnes Dettai - [88] Arild Johnsen - [1] BOLD ID Engine - [8] Babett Guenther - [4] Bruce B. Collette - [3] Catherine W. Mecklenburg - [3] David E. Richardson - [26] Hans Hillewaert - [1] Ingvar Byrkjedal - [3] Jameson Gregg - [1] Jan Y Poulsen - [1] Kate Perez - [5] Lou Van Guelpen - [10] Robert Aguilar - [2] Student - [2] Thomas Knebelsberger - [53]