The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [8]
Norway - [111]
Germany - [30]
Canada - [3]
Netherlands - [7]
Belarus - [1]
Portugal - [2]
United Kingdom - [3]
Russia - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [5] Sujeevan Ratnasingham - [1] Sonia AF Ferreira - [1] Stefan Schmidt - [6] Torbjorn Ekrem - [8] Ben W Price - [2] Jere Kahanpaa - [1] Bjoern Rulik - [2]
Stefan Schmidt - [2] Aina Aspaas - [2] Bjoern Rulik - [25] Thor H Ringsby - [100] Jere Kahanpaa - [1] Matthew P Besley - [1] Oscar Vorst - [7] CBG Collections Unit - [2]
Finnish Museum of Natural History, Zoological Museum - [1]
Mined from GenBank, NCBI - [1]
NTNU University Museum, Department of Natural History - [10]
Natural History Museum, London - [3]
Naturalis Biodiversity Center - [7]
Research Center in Biodiversity and Genetic Resources - [1]
SNSB, Zoologische Staatssammlung Muenchen - [8]
University of Turku, Zoological Museum - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [27]
Sequencing Centers:
Beijing Genomics Institute - [25] Centre for Biodiversity Genomics - [24] Naturalis Biodiversity Center - [7] SNSB, Zoologische Staatssammlung Muenchen - [2]
Photography:
Aina Maerk Aspaas - [1] CBG Photography Group - [1] CBG Robotic Imager - [10] CBG Robotic Rig - [2] Meri Lähteenaro - [1] Mohsen Falahati-Anbaran - [1] Naturalis DNA barcoding facility - [1] Piia Partanen - [1]
Collectors:
... - [1] Antti Haarto - [1] D. - [6] D.Iles - [3] Dick Belgers - [4] Doczkal - [6] Dr Mike Ashworth - [1] E. Stur - [8] F.Koch - [1] GBOL-Team ZFMK - [25] Geir Orsnes - [2] Gerecke - [1] J. - [6] Jaap van der Linden - [3] Jere Kahanpaeae - [1] Marko Mutanen - [1] Mike Ashworth - [1] O.Ermakov - [1] Robert Wolton - [1] Rui Andrade - [1] Rulik et al - [1] S. & Voith - [6] S.Ferreira - [1] Schmidt - [6] T. Ekrem - [8] T.H. Ringsby and B.-E. Saether - [100] Tatsiana Lipinksaya - [1] V.Vekhnik - [1]
Specimen Identification:
Christian F. Kassebeer - [4] Dick Belgers - [4] Geir Oersnes - [2] Hans-Georg Rudzinski - [16] Jaap Van Der Linden - [3] Jere Kahanpaa - [1] Jerome Moriniere - [8] Kaj Winqvist - [6] Kate Perez - [50] Mike Ashworth - [2] Renee Miskie - [62] Robert Wolton - [1] Rui Andrade - [1] Taxonomy Unit - [1] Valerie Levesque-Beaudin - [3]