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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
France - [12]
Germany - [26]
Austria - [1]
Norway - [56]
Finland - [4]
Serbia - [1]
Netherlands - [6]
Russia - [1]
Slovenia - [1]
United Kingdom - [4]
Bulgaria - [4]
Portugal - [1]
Spain - [1]
Italy - [1]
DATA MANAGERS:
Public Data:
Private Data:
Matthew P Besley - [1] Gunilla Stahls - [2] Sujeevan Ratnasingham - [3] Torbjorn Ekrem - [4] Jeffrey H Skevington - [12] Sonia AF Ferreira - [1] Cuong Q Tang - [1] Stefan Schmidt - [2] Bjoern Rulik - [4] Lars Hendrich - [2]
CBG Collections Unit - [52] Marko Mutanen - [1] Gunilla Stahls - [1] Bjoern Rulik - [18] Jeffrey H Skevington - [2] Andrea Chiocchio - [1] CBG Project Management Team - [4] Andrew Lucas - [2] Oscar Vorst - [4] Rodolphe Rougerie - [1] Lars Hendrich - [4]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
SONA116-06 {Ferdinandea cuprea}
License:
CreativeCommons Attribution NonCommercial (2010)
License Holder:
Jeffrey H. Skevington, Agriculture and Agri-Food Canada
Canadian National Collection of Insects, Arachnids and Nematodes - [14]
Centre for Biodiversity Genomics - [4]
Finnish Museum of Natural History, Zoological Museum - [2]
Mined from GenBank, NCBI - [3]
Museum national d'Histoire naturelle - [1]
NTNU University Museum - [1]
NTNU University Museum, Department of Natural History - [55]
National Museum Wales - [2]
Natural History Museum, London - [2]
Naturalis Biodiversity Center - [4]
Private Collection of Iiro Kakko - [1]
Research Center in Biodiversity and Genetic Resources - [1]
SNSB, Zoologische Staatssammlung Muenchen - [8]
University of Oulu - [1]
University of Tuscia, Department of Ecological and Biological Sciences - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [22]
Sequencing Centers:
Beijing Genomics Institute - [16] Centre for Biodiversity Genomics - [28] Macrogen, Europe - [1] Natural History Museum, London - [1] Naturalis Biodiversity Center - [4] SNSB, Zoologische Staatssammlung Muenchen - [4] Swansea University - [2]
Photography:
A. Lucas - [4] CBG Photography Group - [1] CBG Robotic Rig - [51] Chad Whitmell - [4] Charlotte Karlsen - [1] Ella Sippola - [1] Jeffrey H. Skevington - [1] Julien Piolain - [1] Marjo Heikkinen - [1] Naturalis DNA barcoding facility - [2] Piia Partanen - [2] Rene Chabot - [7] Sondre Dahle - [3] ZSM Hymenoptera Photography Group - [2]
Collectors:
A. Eriksen - [1] A. Laugsand - [25] A.M. Skillestad Helmersen - [3] C.Kassebeer - [1] Chiara Martino - [1] D. - [5] Doczkal - [5] Eugenio Potito - [1] F. Lazarus - [4] F. Odegaard - [2] F. Odegaard & O. Hanssen - [1] GBOL-Team ZFMK - [17] Giuseppe Martino - [1] Gretha Skog - [1] I. Herfindal - [17] Iiro Kakko - [1] J&R Skevington - [1] J. - [2] J. & W van Steenis and M.P. van Zuijen - [1] J. van Steenis - [1] J.Stuke - [3] Jaap van der Linden - [1] Jere Kahanpaeae - [2] Kees Goudsmits - [2] L. & V. Penevi - [4] Leg. S. Bot - [1] M. Oestby Nilsen - [2] M. Piepenbrink - [1] M. de Groot - [1] Morgan Amundsen - [1] N. - [1] P.P. Babiy - [1] Reiff - [1] Rui Andrade - [1] Rulik et al - [4] Rulik et al. - [1] S Plummer - [2] S. & Voith - [2] S. Dahle - [4] SAM THOMAS - [1] Sander Bot - [2] Schmidt - [2] Thomas Lebard & Marie Canut - [1] W. Schacht - [1] W. van Steenis - [1] leg. C. Kassebeer - [1] leg. J. van Steenis - [2]
Specimen Identification:
Andre Reimann - [6] Andrew Lucas - [2] Angela Telfer - [52] Axel Ssymank - [1] Bernd Nickel - [1] Bjoern Rulik - [1] C. Kassebeer - [1] Christian Kehlmaier - [1] Dieter Doczkal - [6] Frode Odegaard - [1] Iiro Kakko - [1] Ivan Wright - [1] J. R. Vockeroth - [1] Jaap Van Der Linden - [1] Jeffrey H Skevington - [2] Jens-Hermann Stuke - [2] Jere Kahanpaa - [2] Jeroen Van Steenis - [2] Kate Perez - [9] Kees Goudsmits - [2] Kevin Moran - [3] M. De Groot - [1] Rui Andrade - [1] Sander Bot - [2] Teresa Bonacci - [1] Thomas Lebard - [1] Tore R. Nielsen - [3] Wolfgang Schacht - [2] Ximo Mengual - [7]