The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [545]
France - [38]
Germany - [161]
Norway - [240]
Finland - [24]
Bulgaria - [11]
Czech Republic - [1]
Belarus - [12]
Netherlands - [2]
Portugal - [1]
United States - [2]
Iceland - [1]
United Kingdom - [2]
Austria - [3]
Georgia - [3]
Sweden - [74]
Romania - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [577] Stefan Schmidt - [15] Bjoern Rulik - [109] Torbjorn Ekrem - [68] Ben W Price - [1] Nok ting NT Lam - [1] Jen E Bayer - [1] Sonia AF Ferreira - [1] Sujeevan Ratnasingham - [2] Beverly Mcclenaghan - [1] David Porco - [36] Gunilla Stahls - [4] Alex Smith - [4] Geir Soli - [5]
Miduna Rahulan - [2] Thor H Ringsby - [162] CBG Collections Unit - [89] Geir Soli - [1] Bjoern Rulik - [33] Lujza Keresztes - [1] Lucas Sire - [1] Martin M. Gossner - [5] Jonathan B Reil - [1] Rodolphe Rougerie - [1] Jostein Kjaerandsen - [1] Dominik Vondracek - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
TTMDJ096-10 {Sylvicola cinctus}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Babes-Bolyai University, Department of Biology and Ecology - [1]
Centre for Biodiversity Genomics - [841]
Finnish Museum of Natural History, Zoological Museum - [4]
Institut de Recherche sur la Biologie de l'Insecte - [1]
Mined from GenBank, NCBI - [2]
Museum National d'Histoire Naturelle, Paris - [1]
NTNU University Museum, Department of Natural History - [68]
National Museum of Natural History, Prague - [1]
National Museums Scotland - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [1]
SNSB, Zoologische Staatssammlung Muenchen - [20]
Swiss Federal Research Institute WSL - [5]
Tromso University Museum - [1]
University of Glasgow - [1]
University of Hawaii Insect Museum - [1]
University of Oslo, Natural History Museum - [6]
University of Rouen, ECODIV Laboratory - [25]
Zoologisches Forschungsmuseum Alexander Koenig - [142]
Sequencing Centers:
Beijing Genomics Institute - [33] Biodiversity Institute of Ontario - [811] Centre for Biodiversity Genomics - [3] Macrogen, Europe - [1] Swiss Federal Research Institute WSL - [5] University of Glasgow - [1]
Photography:
Alison Forde - [1] CBG Robotic Imager - [227] Chloe Martin - [1] E Rindal - [5] Hilary Lyttle - [1] Jaclyn McCormick - [26] Jay Cossey - [17] Jay Cossey/ Jasmine St. Pierre - [1] Jenni Moilanen - [4] Jerome Moriniere - [1] Keresztes Lujza - [1] Lebarque Marie - [3] Marc Pollet - [1] Megan Swan - [5] Patrycja Dominiak - [1] Silicon Valley Barcode of Life - [3] Spencer Walker - [5] Trude Magnussen - [1] ZSM Hymenoptera Photography Group - [2]
Collectors:
A. Whiffin - [1] Aimee Breton - [2] Alex Smith - [4] Amber Hiltz - [5] Amy Fennell - [1] Anastasia Roberts - [2] Anderson - [21] Antti Haarto - [4] Axel Hausman - [5] B. McClenaghan - [1] BIO Collections Staff - [1] BIO Team - [1] BIObus 2008 - [1] BIObus 2009 - [9] BIObus 2010 - [1] BIObus 2013 - [260] Bernard Martin - [19] Brent Wilken - [1] Brigitte Hollohan - [2] Brigitte Prevost - [1] C.D`Orsay - [8] C.Englehart - [5] CBG Collections Staff - [1] Cameron Morrison - [1] Carla Palangio - [1] Catherine Wassmansdorf - [1] Cavan Harpur - [3] Chris Silver - [2] Christine Silver - [1] Chrystal Simon - [4] Courtney King - [5] D. - [5] D.Burke - [1] D.Faser - [2] David Burns - [1] Dawn Airdrie - [1] Deirdre Kerdraon - [12] Denise Cameron - [1] Doczkal - [5] Donna Crossland - [3] Donna MacLeod - [1] E. Stur - [69] Erik Kristensen - [33] Erin McMillan - [1] Evan Perry - [3] F.Koch - [6] F.Tremblay - [1] G. Sellmayer - [8] G.Meredith - [1] GBOL-Team ZFMK - [26] Gaia Banelyte - [3] Geir Soli - [5] Gerald B. Skillen - [1] Gergin Blagoev - [2] GregMeredith - [1] Guilhem Parmain - [1] Gunnar Mikalsen - [3] Hanna Rogers - [26] Heidi Andersen - [1] Holly Sapun - [1] Hunterian Museum - [1] I. Iliev - [1] Ilia University & ZFMK - [3] Ingo Wendt - [6] J. - [5] J.B. Reil; C. Doorenweerd - [1] James Sones - [2] Jamie - [1] Jana Petermann - [3] Jeremiah Garber - [1] K.Kerr - [1] Keresztes L. - [1] Kvifte - [3] L. & V. Penevi - [10] L. Ramsay - [2] L.O. Hansen - [1] L.Stepanovic - [4] Lallemand Helene - [2] Lars Ove Hansen - [1] Leslie Barker - [2] Linda Thomas - [1] Lisa Frey - [1] M. Chauvat / M1 students - [34] M.Cain - [1] Marc Pollet - [1] Marko Mutanen - [20] Matt Davis - [1] Medo Toure - [3] Melody Donald - [1] Michael D. Wilson - [3] Michal Tkoc - [1] Nich Seebach - [1] Park Staff - [1] Paul Hebert - [7] Philip Davis - [2] Philip Hebert - [2] R. v/d Weele - [1] R.Blakeney - [1] R.Reid - [13] Rachael De Sousa - [1] Rebecca Stone - [1] Robert Mound - [1] Rui Andrade - [1] Rulik et al - [38] Rulik et al. - [63] S. & Voith - [5] S.Devita - [1] S.Gerrow - [5] SVBOL - [1] Sandy Pond - [2] Schmisdt - [5] Shirley Butland - [80] Stephen Querengesser - [2] Steve Pronovost - [2] Stuart Crawford - [4] T. Ekrem - [69] T.H. Ringsby and B.-E. Saether - [162] Tatsiana Lipinksaya - [12] Tim Currie - [1] Tomislav Terzin - [4] Travis Carr - [1] Tyler Schaefer - [2] Tyler Zemlak - [1] V. Blagoderov - [1] W. Schacht - [2] students at Hersleb sec. School - [1]
Specimen Identification:
Anastasia Roberts - [2] Angela Telfer - [257] BOLD ID Engine - [1] Bjoern Rulik - [7] Bold - [2] Chloe Martin - [1] Dieter Doczkal - [5] Geir Soli - [6] Geoff E. Hancock - [1] Gunnar Mikalsen Kvifte - [7] J. Flinck - [4] Jan Sevcik - [1] Jana Petermann - [3] Jonathan B Reil - [1] Juergen Kappert - [3] Kate Perez - [529] Lujza Keresztes - [1] Moritz Fahldieck - [6] Renee Miskie - [10] Rui Andrade - [1] Valerie Levesque-Beaudin - [259] Vladimir A Blagoderov - [1] Volodymyr Pushkar - [8] Wolfgang Schacht - [2]