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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Frederik Torp Petersen, Rudolf Meier, Sujatha Narayanan Kutty and Brian M. Wiegmann The phylogeny and evolution of host choice in the Hippoboscoidea (Diptera) as reconstructed using four molecular markers. Molecular Phylogenetics and Evolution 2007-10-01;45(1):111-122 (PDF)
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [154]
United States - [245]
Finland - [3]
Pakistan - [117]
Portugal - [4]
Egypt - [1]
Germany - [37]
Netherlands - [3]
Czech Republic - [12]
France - [3]
Spain - [8]
Russia - [3]
Hungary - [1]
China - [8]
Poland - [1]
Norway - [22]
South Africa - [1]
Italy - [5]
Austria - [2]
DATA MANAGERS:
Public Data:
Private Data:
Mikko Pentinsaari - [1] Sujeevan Ratnasingham - [27] CBG Project Management Team - [134] Jen E Bayer - [1] CBG Collections Unit - [5] Mat Seidensticker - [2] Bjoern Rulik - [17] Alex Smith - [8] Jim M. Moore - [1] Stefan Schmidt - [16] Ross D Stewart - [1] Sonia AF Ferreira - [2] Ana C.O. Farinha - [1] Anais Renaud - [4] Lifescanner Team - [1] Jere Kahanpaa - [3] Steffen Roth - [1] Valerie Levesque-Beaudin - [9]
Ana Montero - [1] CBG Collections Unit - [330] Jade Savage - [11] CBG Project Management Team - [10] Thor H Ringsby - [20] Bjoern Rulik - [21] Oscar Vorst - [3] Stefan Schmidt - [1] Alberto AFL Fuentes lopez - [4] Dominik Vondracek - [1] Charles S Walker - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
JMFLY095-13 {Fannia}
License:
CreativeCommons Attribution (2012)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian National Collection of Insects, Arachnids and Nematodes - [9]
Centre for Biodiversity Genomics - [512]
Finnish Museum of Natural History, Zoological Museum - [3]
Mined from GenBank, NCBI - [27]
National Museum of Natural History, Prague - [1]
Naturalis Biodiversity Center - [3]
Research Center in Biodiversity and Genetic Resources - [2]
SNSB, Zoologische Staatssammlung Muenchen - [17]
Silicon Valley Barcode of Life - [1]
Universidad de Murcia - [4]
Universidade de Lisboa, Faculdade de Ciencias - [1]
University of Bergen, Natural History Collections - [1]
University of Guelph, School of Environmental Sciences, Nigel Raine Lab - [1]
University of Johannesburg, Department of Botany and Plant Biotechnology, African Centre for DNA Barcoding - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [38]
Sequencing Centers:
Beijing Genomics Institute - [21] Centre for Biodiversity Genomics - [186] Macrogen, Europe - [1] Naturalis Biodiversity Center - [3] SNSB, Zoologische Staatssammlung Muenchen - [12]
Photography:
Alison Forde - [3] Ana Montero - [2] Andreanne Lessard - [1] CBG Photography Group - [22] CBG Robotic Imager - [271] CBG Robotic Rig - [78] Jaclyn McCormick - [1] Jay Cossey - [3] Jen Bayer - [3] Jenni Moilanen - [1] Jim Moore - [1] Joshua Norby - [1] LifeScanner User - [1] Megan Swan - [8] Piia Partanen - [2] Rick Turner - [1] Spencer Walker - [9] St. Roth - [1] Veronique Bellavance - [9]
Collectors:
A. Moores - [3] A. Renaud - [1] A.Borisenko - [1] Aija White - [1] Alberto Fuentes-Lopez - [4] Alex Smith - [8] Alina Mcmillan - [1] Allingham R - [2] Ana C. O. Farinha - [1] Apphia M. Bowser - [1] Arif Khan - [20] Austin; Laine - [42] B. Sharp - [1] BIO Collections - [2] BIO Collections Staff - [1] BIO Team - [1] BIOBus 2012 - [2] BIObus 2009 - [1] BIObus 2013 - [3] BIObus 2014 - [3] BIObus: A.Borisenko - [2] Baker - [42] Barb Maschke - [1] Belleuvre Nina - [2] Benjamin - [1] Benjamin; Hardage - [1] Biobus 2010 - [3] Biobus 2011 - [1] Brandt - [1] Brenda Csordas - [1] Bruce A. Bennett - [1] C. Aubert - [1] CBG Collections Staff - [8] CBH staff - [1] Cameron Morrison - [1] Cavan Harpur - [3] Christina Boser - [3] Chrystal Simon - [12] D. - [3] D.F. Gross - [1] D.Whitaker - [3] Diana Phan - [2] Doczkal - [3] Dr. Ahktar Rasool - [1] Dr. Javed Iqbal - [7] Dr. Naeem Shahwani - [4] Dr. Shah Jahan - [65] E. l`Heureux - [1] E. l`Heureux & T.-L. Rossit - [1] Ellie - [8] Eva; Allingham - [5] Eva; Deer - [8] F.Koch - [2] G. Kung - [15] GBOL-Team ZFMK - [21] Giar-Ann - [96] Heidi Brown - [42] Heraty lab - [1] Horna Lowell - [13] Horna Lowell E - [2] Ian McDonald - [3] J. - [2] J. Andrews - [1] J. Baylet & M. Giroux - [1] J. Heraty - [2] J.Cossey - [3] J.Foster - [4] J.McCormick - [3] J.Smith - [2] J.Sones - [3] Jacob - [2] Jacob; Perez - [17] James Sones - [3] Jana Podhorna - [11] Jari Flinck - [1] Jen Reimer - [1] Jen and Hilary Bayer - [1] Jere Kahanpaeae - [2] Jesse; Tang - [42] Jim Moore - [1] Jiri Preisler - [1] John T. Smit - [3] Jones - [17] Joshua Kohn - [1] Julia - [17] Julia G. Betz - [2] Julia; Jones - [2] K. Dominguez - [2] K. McCabe - [1] K. Perez - [1] Kate R. Goodrich - [1] Kim Oppertshauser - [2] Korneyev - [2] Kristen McGuire - [2] Kristina J. Anderson - [2] Kung - [96] L. Janke - [1] L. Jolicoeur - [1] L. Trudel - [1] L.Gardiner - [1] LACM - [15] M. Akhtar - [9] M.Milton - [2] M.Rafique - [1] Malik Ghulam Sarwar - [3] Maria A. Rojas - [1] Mat Seidensticker - [2] Matt Bowser - [1] Mr. Numan - [1] Muhammad Rafique - [3] N.Bloomfield - [1] Naila Nazir Khan - [1] Nathan - [42] Nazir Ahmed - [2] Nicole Labine - [3] O.El-Ansary - [1] O.Ermakov - [1] Parks Canada Staff - [2] Perez - [2] Q.Abbas - [1] R. Loiselle - [5] R.Labbee - [2] R.Pojar - [1] RF Lauff - [9] Rachel - [5] Rikmyrprosjektet - [1] Rui Andrade - [2] Rulik et al - [10] Rulik et al. - [5] S. & Voith - [2] S. Heacox - [2] S.McCubbin - [1] S.Miller - [1] S.Ratnasingham - [2] SVBOL - [1] Schmidt - [2] Scott - [1] Severyn; Maples - [2] Shahbaz Ahmad - [1] Sherrie Cochrane - [1] T. Decaens - [1] T.Glik - [1] T.H. Ringsby and B.-E. Saether - [20] Thomas Zechmeister - [2] Tomislav Terzin - [8] Tyler Schaefer - [1] V.Levesque-Beaudin - [2] V.Vekhnik - [1] Val Albu - [9] Weary - [1]
Specimen Identification:
Aija F White - [1] Alberto AFL Fuentes lopez - [4] Ana Montero-Castano - [1] Anais Renaud - [1] Angela Telfer - [50] Bold - [2] Bradley J. Sinclair - [9] Dieter Doczkal - [3] Hans-Georg Rudzinski - [16] J. Flinck - [1] Jade Savage - [4] Jere Kahanpaa - [2] Jerome Moriniere - [14] Jim M. Moore - [1] Jiri Preisler - [1] John T. Smit - [3] Kate Perez - [97] Ludovic Jolicoeur - [1] Marjolaine Giroux - [1] Muhammad Ashfaq - [2] Paul D.N. Hebert - [54] Renee Miskie - [8] Rui Andrade - [2] Taxonomy Unit - [9] Valerie Levesque-Beaudin - [48] Veronique Bellavance - [8] Wolfgang Adaschkiewitz - [2]