The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Sikes, D.S., M. Bowser, J. M. Morton, C. Bickford, S. Meierotto, K. Hildebrandt. Building a DNA barcode library of Alaska’s non-marine arthropods Genome 2016-10-21;60(3):248-259 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United States - [5]
United Kingdom - [2]
Germany - [11]
Finland - [8]
Bulgaria - [2]
Netherlands - [3]
Austria - [4]
Norway - [3]
Italy - [4]
Portugal - [1]
Slovakia - [1]
Sweden - [3]
Romania - [1]
France - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jason R Grant - [1] Peter Huemer - [7] Wolfgang Stark - [1] Sonia AF Ferreira - [1] Arild Johnsen - [1] Torbjorn Ekrem - [2] Andreas Segerer - [5] Camiel Doorenweerd - [3] Axel Hausmann - [2] Stefan Schmidt - [1] Derek S. Sikes - [2] CBG Project Management Team - [2] Gergin A. Blagoev - [2] Marko Mutanen - [6] Paul Hebert - [4]
Carlos Lopez-Vaamonde - [1] Peter Buchner - [1] Dana Strasiftakova - [1] CBG Collections Unit - [3] Andreas Segerer - [3]
Haus der Natur, Landessammlungen Niederoesterreich - [1]
Landesmuseum Kaernten - [1]
NTNU University Museum, Department of Natural History - [2]
Natural History Museum, London - [2]
Naturalis Biodiversity Center - [3]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Alfred Haslberger - [2]
Research Collection of Carlos Lopez Vaamonde - [1]
Research Collection of Kai Berggren - [1]
Research Collection of Theo Gruenewald - [1]
Research Collection of Thomas Guggemoos - [1]
S & Z Kovacs Research Collection - [1]
SNSB, Zoologische Staatssammlung Muenchen - [7]
Slovak National Museum, Natural History Museum - [1]
Sofia University, St. Kliment Ohridski - [2]
Tiroler Landesmuseum Ferdinandeum - [5]
University of Alaska Museum - [3]
University of Oulu, Zoological Museum - [6]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [40] GATC Biotech AG - [1] Naturalis Biodiversity Center - [3]
Photography:
Andreas Segerer - [2] CBG Photography Group - [2] CBG Robotic Imager - [3] Casey Bickford - [2] DNA barcoding facility - [2] Erik Bostrom - [2] G. Rotheneder - [1] Jaclyn McCormick - [4] Jason Grant - [1] Jay Cossey - [1] Jerome Moriniere - [1] Jules Dessart-Pardon - [1] Kai Berggren - [1] Lauren Van Patter - [1] Marko Mutanen - [1] Martin Secansky - [1] Megan Swan - [1] Naturalis DNA barcoding facility - [1] ZSM Photography Team - [3] photo work group Dr. Axel Hausmann - [1]
Collectors:
19-Jun-13 - [1] Alfred Haslberger - [2] Andreas Werno - [1] Anttoni Mutanen - [1] B. Zlatkov - [2] Berggren - [1] Carl Fredrik - [1] Carlos Lopez Vaamonde - [1] Ch. - [1] D.Collet - [2] Deirdre Kerdraon - [1] Dominique M. Collet - [2] Doorenweerd - [2] Dr. Andreas H. Segerer - [2] Dr. Theo Gruenewald - [1] Erik Kristensen - [2] G. Sellmayer - [1] Hausmann - [1] Huemer P. - [5] Jason Grant - [1] Kai - [1] Kovacs - [1] Luehr - [1] M. Secansky - [1] Marko Mutanen - [8] Martin Corley - [1] Nestori Mutanen - [1] Opheim - [1] Panu Vaelimaeki - [4] Rui Andrade - [1] SMP 161 - [1] Stark - [1] Thomas Guggemoos - [1] Werner Wolf - [2] Wieser - [1] Wolfgang - [1]
Specimen Identification:
Andreas Segerer - [4] Christian Wieser - [1] Jason R Grant - [1] Kai Berggren - [1] Kate Perez - [3] Martin Corley - [1] Martin Secansky - [1] Paul Hebert - [31] Peter Huemer - [3] Tiara YASMEEN Hensel - [1] Wolfgang Stark - [1]