The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Sikes, D.S., M. Bowser, J. M. Morton, C. Bickford, S. Meierotto, K. Hildebrandt. Building a DNA barcode library of Alaska’s non-marine arthropods Genome 2016-10-21;60(3):248-259 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet and Stijn Desmyter Why is the molecular identification of the forensically important blowfly species Lucilia caesar and L. illustris (family Calliphoridae) so problematic? Forensic Science International 2012-11-30;223(1-3):153-159 (PDF)
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
Jeffrey D. Wells, Richard Wall and Jamie R. Stevens Phylogenetic analysis of forensically important Lucilia flies based on cytochrome oxidase I sequence: a cautionary tale for forensic species determination. International Journal of Legal Medicine 2007-05-01;121(3):229-233 (PDF)
Stevens,J,J;Wall,R,R Genetic relationships between blowflies (Calliphoridae) of forensic importance. Forensic Science International 2001-08-15;120(-1):116-23
Jamie R. Stevens The evolution of myiasis in blowflies (Calliphoridae). International Journal for Parasitology 2003-09-15;33(10):1105-13
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [177]
United Kingdom - [45]
Finland - [6]
Belgium - [42]
Germany - [94]
France - [11]
Poland - [7]
Portugal - [30]
United States - [12]
Russia - [1]
China - [94]
Netherlands - [4]
Spain - [228]
Czech Republic - [17]
Norway - [3]
Bulgaria - [1]
Lebanon - [2]
Italy - [8]
Austria - [1]
Curacao - [1]
Georgia - [2]
Japan - [4]
DATA MANAGERS:
Public Data:
Private Data:
Bjoern Rulik - [17] CBG Collections Unit - [148] Derek S. Sikes - [11] Lifescanner Team - [1] Alex Smith - [1] Dezene P.W. Huber - [4] Stefan Schmidt - [40] Sujeevan Ratnasingham - [389] Gontran Sonet - [86] Ramya Manjunath - [3] Aina Aspaas - [3] Sonia AF Ferreira - [1] Eva S.A. Rolo - [16] Jere Kahanpaa - [5] Ana C.O. Farinha - [1] Gunilla Stahls - [1]
CBG Collections Unit - [21] Lifescanner Team - [1] Jade Savage - [2] Muhammad Ashfaq - [2] Paul Marino - [1] Amanda M. Naaum - [1] Ana Montero - [1] Nikolaus U Szucsich - [1] Alberto AFL Fuentes lopez - [13] Jere Kahanpaa - [1] Oscar Vorst - [4] Bjoern Rulik - [43] Jocelyn E Behm - [1] Sonia AF Ferreira - [1] Qiaoyun Yue - [10]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
UAMIC900-13 {Lucilia illustris}
License:
CreativeCommons Attribution NonCommercial No Derivatives (2013)
Biodiversity Institute of Ontario, Informatics Department - [9]
Bishop's University - [2]
Centre for Biodiversity Genomics - [178]
Finnish Museum of Natural History, Zoological Museum - [6]
Memorial University of Newfoundland - [1]
Mined from GenBank, NCBI - [392]
National Institute of Criminalistics and Criminology, Belgium - [86]
Naturalis Biodiversity Center - [4]
Naturhistorisches Museum Wien - [1]
Private Collection of H. Haraldseide - [3]
Research Center in Biodiversity and Genetic Resources - [2]
Research Collection of Jaakko Pohjoismaeki - [1]
SNSB, Zoologische Staatssammlung Muenchen - [40]
Temple University - [1]
Universidad de Murcia - [13]
Universidade de Lisboa, Faculdade de Ciencias - [17]
University of Alaska Museum - [2]
University of Guelph - [1]
University of Guelph, School of Environmental Sciences, Nigel Raine Lab - [1]
Zhongshan Entry-Exit Inspection and Quarantine Bureau - [10]
Zoologisches Forschungsmuseum Alexander Koenig - [60]
Sequencing Centers:
Beijing Genomics Institute - [43] Biodiversity Institute of Ontario - [178] Canadian Centre for DNA Barcoding - [10] Centre for Biodiversity Genomics - [10] Naturalis Biodiversity Center - [4] Royal Belgian Institute of Natural Sciences - [86] SNSB, Zoologische Staatssammlung Muenchen - [27]
Photography:
Alex Knapp - [6] Alison Forde - [3] Ana Montero - [2] CBG Photography Group - [6] CBG Robotic Imager - [4] CBG Robotic Rig - [5] Casey Bickford - [2] Chad Whitmell - [2] Hakon Haraldseide - [3] Hymenoptera Photo Group - [2] Jaclyn McCormick - [2] Jasmine St.Pierre - [2] Jay Cossey - [1] Jenni Moilanen - [1] Jerome Moriniere - [1] Jinjing Wang - [1] LifeScanner User - [18] Maria Faticov - [2] Megan Swan - [3] Mohammed Hannan - [5] Naturalis DNA barcoding facility - [4] Piia Partanen - [3] Rick Turner - [7] Riikka Jarkko - [1] Sabine Schoder - [1] Spencer Walker - [4] Veronique Bellavance - [2]
Collectors:
Abida Nasreen - [2] Aija White - [4] Alberto Fuentes-Lopez - [13] Alex Smith - [1] Ana C. O. Farinha - [1] Antti Haarto - [3] Axel Hausman - [1] B.A. Bennet - [1] B.Titaro - [1] B.Wijdeven - [1] BIO Collections - [4] BIO Collections Staff - [6] BIO Team - [1] BIOBus 2012 - [7] BIObus 2008 - [2] BIObus 2009 - [14] BIObus 2010 - [6] BIObus 2013 - [30] BIObus 2014 - [1] Belleuvre Nina - [5] Benoit Vincent - [6] Brandon van Sten - [1] Bruce A. Bennett - [6] C.Sheffield - [1] CBG Collections Staff - [8] Cameron Richards and Catherine Rowlinson - [12] Carla Palangio - [1] Caroline Chimeno - [2] Chris Johnstone - [1] Christine Carriere-Roth - [1] Claire Gulliver - [1] D. - [5] Dave Lewis - [1] Doczkal - [5] Dryden High School - [1] Elizabeth Beks - [9] Evan Perry - [1] Evgeny Zakharov - [1] F. Hubrecht - [1] F. Noel - [1] F.Koch - [1] F.Lui - [1] G. Sellmayer - [1] GBOL-Team ZFMK - [43] Gerald Skillen - [1] Grade 12 Biology - [1] Hakon Haraldseide - [3] Hans Huijbregts - [4] Heidi Paterson - [2] Hu J - [3] Ilia University & ZFMK - [2] Ingo Wendt - [1] J Wang - [1] J. - [5] J. Mailoux - [1] J.Brewster - [2] J.H - [1] J.L.Stiles - [4] J.Sibbald - [1] Jaakko Pohjoismaeki - [1] James Sones - [8] Jana Podhorna - [17] Jason Straka - [2] Jens Amendt - [7] Jere Kahanpaeae - [2] John Parrott - [2] John Pollock - [2] Kimorie Lees - [1] Krzysztof Szpila - [7] L. & V. Penevi - [1] L. Trudel - [2] L.Gardiner - [3] Labo MIC - [36] Lisa Saperstein - [2] Lise Trudeau-Balcaen - [1] M A Hannan - [5] M.A.Hannan - [1] M.Brown - [1] Maria A. Rojas - [1] Mariah McInnis - [1] Maxim Larrivee - [1] Meridith White - [1] N.Perry - [1] Nikolaus - [1] P. Marino - [1] PROBE - [1] Pam Ryznar - [1] Park Staff - [2] Paul Hebert - [3] Philip Hebert - [2] R. Popko - [2] Ray Scott - [1] Reijo Jussila - [1] Richard Wall - [7] Rui Andrade - [2] Rulik et al - [15] S. & Voith - [5] S. Behrens - [2] S. Vanpoucke - [4] S.Devita - [1] S.Monckton - [2] Schmidt - [5] Sean McCammon - [2] Sebastian Swoboda - [3] Stephanie Church - [5] Stephanie Hill - [1] Szucsich - [1] T.Davison - [2] Todd Smith - [1] Tyler Zemlak - [1] Vickie Sooley - [1] Wang XD - [5] Yue QY - [2] Zhaofu Yang - [1] unknown - [10]
Specimen Identification:
Aija F White - [4] Alberto AFL Fuentes lopez - [13] Ana C.O. Farinha - [1] Angela Telfer - [18] Antti Haarto - [3] BOLD ID Engine - [11] Benoit Vincent - [6] Bold - [2] Cameron Richards - [12] Caroline Chimeno - [2] De-xing Liu - [10] Dieter Doczkal - [5] Hakon Haraldseide - [3] Hans Huijbregts - [4] Hans-Georg Rudzinski - [28] J. Flinck - [2] Jaakko Pohjoismaki - [1] Jason Straka - [2] Jens Amendt - [7] Jerome Moriniere - [32] Jinjing Wang - [2] Jonathan Parrott - [2] Juergen Kappert - [5] Kate Perez - [33] Klaus von der Dunk - [3] Krzysztof Szpila - [7] Reijo Jussila - [1] Renee Miskie - [10] Richard Wall - [7] Rui Andrade - [2] Sebastian Swoboda - [3] Terry L. Whitworth - [25] Valerie Levesque-Beaudin - [94] Wolfgang Adaschkiewitz - [5] Yves Braet - [42]