The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
M. A. Cummings and E. S. Krafsur Spatial diversity in mitochondrial cytochrome c oxidase in house flies. Medical and Veterinary Entomology 2005-03-01;19(1):53-59 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marcos Túlio de Oliveira, Ana Maria Lima de Azeredo-Espin and Ana Cláudia Lessinger Evolutionary and structural analysis of the cytochrome c oxidase subunit I (COI) gene from Haematobia irritans, Stomoxys calcitrans and Musca domestica (Diptera: Muscidae) mitochondrial DNA. DNA Sequence 2005-04-01;16(2):156-160 (PDF)
Wells,JD,J D;Pape,T,T;Sperling,FA,F A DNA-based identification and molecular systematics of forensically important Sarcophagidae (Diptera). Journal of Forensic Sciences 2001-09-01;46(5):1098-102
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
Anais Krystel Renaud BIODIVERSITY OF THE MUSCIDAE (DIPTERA) FROM CHURCHILL, MANITOBA, CANADA, WITH TAXONOMIC ISSUES REVEALED OR RESOLVED BY DNA BARCODING Thesis 2011-12-01
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Thailand - [18]
Canada - [11]
United States - [19]
Japan - [2]
Pakistan - [25]
Australia - [8]
Finland - [3]
Kenya - [11]
India - [38]
South Africa - [22]
Portugal - [4]
Brazil - [2]
Malaysia - [5]
Egypt - [33]
French Polynesia - [1]
South Korea - [8]
Ecuador - [15]
Netherlands - [3]
Bangladesh - [24]
Norway - [2]
Germany - [20]
China - [105]
Sweden - [1]
Spain - [20]
Saudi Arabia - [14]
Iran - [1]
Chile - [12]
Indonesia - [1]
Israel - [2]
Mexico - [2]
Gabon - [10]
Ghana - [6]
Colombia - [5]
Madagascar - [1]
Sudan - [3]
Poland - [1]
New Zealand - [1]
Turkey - [9]
Tanzania - [4]
Iraq - [1]
Namibia - [1]
Suriname - [1]
Lebanon - [1]
Nigeria - [1]
Malta - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [47] Darren F. Ward - [1] CBG Collections Unit - [11] Jenna L Braun - [1] Stefan Schmidt - [10] Peter Hamback - [1] Sujeevan Ratnasingham - [262] Ramya Manjunath - [4] Tim Whittier - [2] David A. Donoso - [15] Sonia AF Ferreira - [1] Rakshit Ojha - [1] Wendy Moore - [1] Sean W. Prosser - [1] Jiraporn Ruangsittichai - [6] Sylvain Charlat - [1] Sandi Willows-Munro - [2] Michelle van der Bank - [3] Ana C.O. Farinha - [1] Jere Kahanpaa - [3] Daniel Masiga - [10] Anais Renaud - [4]
Eduardo Tovar - [4] CBG Project Management Team - [26] CBG Collections Unit - [70] Camille Le Roy - [1] Samuel Nibouche - [1] Ketsarin Thipphet - [10] Bjoern Rulik - [11] Atanu Naskar - [1] Vikas Kumar - [1] Jeongheui Lim - [3] Gulab D. Khedkar - [6] Jade Savage - [1] Alberto AFL Fuentes lopez - [10] Qiaoyun Yue - [50] Oscar Vorst - [2] Eduardo GA Coelho - [1] Charles S Walker - [8] Jostein Kjaerandsen - [2] Sara Velasquez - [1]
Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement, La Reunion - [1]
Centre for Biodiversity Genomics - [148]
Finnish Museum of Natural History, Zoological Museum - [3]
Instituto de Investigacion de Recursos Biologicos Alexander von Humboldt - [4]
Landcare Research, New Zealand Arthropod Collection - [1]
Mahidol University, Dept of Medical Entomology - [6]
Mined from GenBank, NCBI - [267]
Naresuan University - [10]
National Bureau of Agricultural Insect Resources, India - [1]
National Institute for Biotechnology and Genetic Engineering - [3]
National Museums of Kenya - [10]
National Science Museum of Korea - [3]
Naturalis Biodiversity Center - [2]
Paul Hebert Centre for DNA Barcoding and Biodiversity Studies - [6]
Personal Collection of Jenna L Braun - [1]
Pontificia Universidad Catolica del Ecuador - [15]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Graeme V. Cocks - [2]
SNSB, Zoologische Staatssammlung Muenchen - [9]
Stockholm University, Dept of Ecology, Environment and Plant Sciences - [1]
Tromso University Museum - [2]
Universidad EAFIT - [1]
Universidad Federal de Minas Gerais, Laboratorio de Genetica - [1]
Universidad de Murcia - [10]
Universidade de Lisboa, Faculdade de Ciencias - [1]
Universite Claude Bernard Lyon 1 - [1]
University of Arizona, Insect Collection - [1]
University of Johannesburg - [3]
University of KwaZulu-Natal - [2]
Wageningen University and Research - [1]
Western Australian Museum - [2]
Zhongshan Entry-Exit Inspection and Quarantine Bureau - [50]
Zoological Survey of India - [2]
Zoologisches Forschungsmuseum Alexander Koenig - [11]
Sequencing Centers:
Beijing Genomics Institute - [11] Centre for Biodiversity Genomics - [111] Eton Bioscience Inc. - [1] Genoscope, Centre National de Sequencage - [1] Molecular Cloning Laboratories - [1] Naturalis Biodiversity Center - [2] Paul Hebert Centre for DNA Barcoding and Biodiversity Studies - [2] SNSB, Zoologische Staatssammlung Muenchen - [9] Universidade Federal de Minas Gerais, Escola de Veterinaria - [1]
Photography:
Anna Lempiainen - [2] Anne Duplouy, Gladys Mialdea and Sylvain Charlat - [1] CBG Photography Group - [14] CBG Robotic Imager - [14] CBG Robotic Rig - [32] Camille Le Roy - [1] DF Ward - [1] Graeme Cocks - [1] Graeme V. Cocks - [4] H.Kanwal - [1] Jaclyn McCormick - [2] Jenna Braun - [3] Liam Roberts - [1] M. Z. Rehman - [2] Mariela Domínguez - [6] Martin T. Dahl - [2] Miguel Jurado - [36] Naturalis DNA barcoding facility - [1] Ntshembo Ngwenyama - [3] Piia Partanen - [2] Rick Turner - [1] Spencer Walker - [1] T. Duze - [2] Tim Burns - [1] Tipphet K - [10] Veronique Bellavance - [1]
Collectors:
A. Renaud - [4] A.Samejo - [2] AK - [1] Alberto Fuentes-Lopez - [10] Alejandro Guerrero Cupacan - [4] Allan Woodhouse - [1] Ana C. O. Farinha - [1] Ana Ospina Montoya & Evelyn Tamayo Gaviria - [1] Anne Duplouy - [1] Antti Haarto - [3] Arif Khan - [5] Arif Muhammad Khan - [1] Atle Nilsen - [2] Austin; Laine - [1] BAA - [3] BIObus 2008 - [4] Baker - [1] BioBus 2011 - [2] Biobus 2010 - [1] Biobus 2011 - [5] Bontle - [1] C. Haber - [1] C. Saliba - [1] CBG Collections Team - [1] Camille Le Roy - [1] Camilo Quiroga - [4] Carlos Lopez-Vaamonde - [10] Constance Mathoho - [2] D.F. Gross - [1] Dan Bock - [1] Dinesh Nalage - [2] Dr. Dhriti & team - [1] Dr. Naeem Shahwani - [2] Dr.Ahmed - [2] Dr.Riffat - [2] E. Moreno - [5] E. Zakharov - [12] ED - [1] EYD - [3] Eduardo Coelho / Danilo Pimenta - [1] Estiven Londono - [2] Etai Kahana - [2] F.N. Khoso - [1] G. Cocks - [2] G. V. Cocks - [3] GBOL-Team ZFMK - [11] H.Kloeppel - [2] Hans Huijbregts - [1] Herman Staude - [5] J. Das - [1] J. deWaard - [12] Jeremy deWaard - [10] Jesse; Tang - [1] Jisming See Shi Wei - [3] John T. Smit - [1] Joseph Hubert Masoy - [4] Joshua Kohn - [1] Ju heok Yoon - [3] Juan Eduardo Torres - [2] K.Huerta - [2] Khoso F.N - [1] L. Trudel - [1] Laban Njoroge - [10] Liu DX - [3] Lufuno Nenungwi - [1] Luz Estefany Rodriguez - [2] M Zia - [1] M. Ashfaq - [1] M. Bou Dagher Kharrat - [1] M.Masood - [1] M.Winterowd - [2] Malik Ghulam Sarwar - [2] Margaret Kinnaird - [1] Mariela Dominguez - [3] Muhammad Tufail - [1] NAA - [3] Nathan - [1] Nazir Ahmed - [2] O.El-Ansary - [9] Paola Rodriguez - [2] Peter Hamback - [1] Qiu DY - [3] R. Kahale - [1] R. Le Grice - [1] R. Sultana - [1] R.Sultana - [2] RSA - [1] Rafael Ojeda Flores - [2] Riffat - [1] Rui Andrade - [1] S. Aguirre - [7] S.Ferreira - [1] Sabila Afzal - [2] Samy Zalat - [21] Santosh - [1] Santosh Mazumdar - [21] Seong Yoon Kim and Tae Ho Jo - [5] Shark Bay School students - [1] South Newman Primary School students - [1] TDH - [4] TDH/EYK/NAA/BAA - [2] Tanaka Muradzikwa - [1] Tanner Bland - [1] Thina Duze - [2] Tipphet K. - [10] Tomislav Terzin - [1] Vanessa Kadosoe - [1] Vanessa Otero - [2] Vikas Kumar - [1] Vipin Hiremath - [4] Vusi Sambo - [1] W. Akram - [1] W. el Houjeir - [1] Wang XD - [25] Wei XY - [9] Yang MF - [3] Yudthana Samung - [6] Yue QY - [7] unknown - [9]
Specimen Identification:
Alberto AFL Fuentes lopez - [10] Ana C.O. Farinha - [1] Ana Ospina Montoya - [1] Anais Renaud - [4] Angela Telfer - [27] Antti Haarto - [3] Arne C. Nilssen - [2] Atanu Naskar - [1] BOLD Machine Learning Tool Kit - [1] Bold - [5] Camille Le Roy - [1] De-xing Liu - [50] Dhriti Banerjee - [1] Erik Holm - [3] Graeme V. Cocks - [5] Hans Huijbregts - [1] Hans-Georg Rudzinski - [5] Jade Savage - [5] John T. Smit - [1] Ju Heok Yoon - [3] Julian Clavijo-Bustos - [4] Kate Perez - [55] Ketsarin Thipphet - [10] Laban N. Njoroge - [10] Mariela Dominguez - [3] Marjolaine Giroux - [1] Muhammad Ashfaq - [4] R. Le Grice - [1] Renee Miskie - [15] Rui Andrade - [1] Saul J Aguirre - [3] Stefania A Tapia - [9] Sylvain Charlat - [1] Tom Maus - [1] Valerie Levesque-Beaudin - [41] Wendy Moore - [1] Yudthana Samung - [6]