The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthieu Leray, Nancy Knowlton DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity Proceedings of the National Academy of Science 2015-02-02;112(7):2076-2081 (PDF)
Kathleen Conlan, Andrea Desiderato, Jan Beermann Jassa (Crustacea: Amphipoda): a new morphological and molecular assessment of the genus Zootaxa 2021-03-04;4939(1):001-191 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United States - [137]
Canada - [7]
North Sea - [148]
Germany - [32]
Argentina - [12]
Netherlands - [3]
Norway - [22]
South Korea - [2]
Spain - [27]
Chile - [14]
Iceland - [20]
Peru - [9]
Turkey - [3]
DATA MANAGERS:
Public Data:
Private Data:
Matt Lemay - [1] Nicholas Jeffery - [1] Sujeevan Ratnasingham - [118] Allison Hall mullen - [262] Lifescanner Team - [1] Student Portal Manager - [1] Matthieu Leray - [10] Juan Lancia - [2] Daniel L. Distel - [1] Michael J. Raupach - [18] Adriana Radulovici - [2] Pedro Martinez Arbizu - [6] Berry van der Hoorn - [3]
Jorge L Ramirez - [1] Kyle M Knysh - [2] Matthieu Leray - [1] Katrine Kongshavn - [5] Allison Hall mullen - [3] Robert Aguilar - [2] Ana Teresa Capucho - [1]
Alfred Wegener Institute for Polar and Marine Research - [134]
Centre for Biodiversity Genomics - [1]
Centre for Biodiversity Genomics, Informatics Department - [1]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [24]
Florida Museum of Natural History - [1]
Hakai Institute - [1]
Instituto del Mar del Peru - [1]
Mined from GenBank, NCBI - [118]
NTNU University Museum, Department of Natural History - [1]
Naturalis Biodiversity Center - [3]
Ocean Genome Legacy - [1]
Smithsonian Institution, National Museum of Natural History - [12]
Universidad Nacional de Mar del Plata, Estacion Nagera - [2]
Universite du Quebec a Rimouski - [2]
University of Bergen, Natural History Collections - [4]
University of New England - [1]
University of Oslo, Natural History Museum - [1]
University of Prince Edward Island - [2]
Wageningen Marine Research - [131]
Sequencing Centers:
Centre for Biodiversity Genomics - [33] Generic Commercial Labs - [1] Macrogen, Europe - [6] Macrogen, USA - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [13]