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Specimen Data Sequences Combined

Barcode Index Number Registry For BOLD:AAA1628

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  BIN DETAILS:
  BIN URI: BOLD:AAA1628 Average Distance: 0.37% (p-dist)
  DOI: dx.doi.org/10.5883/BOLD:AAA1628 Maximum Distance: 0.98% (p-dist)
  Member Count: 293 [347 Public] Distance to Nearest Neighbor: 3.13% (p-dist)
  Barcode Compliant Members: 351
  Founding Record:
 
  NEAREST NEIGHBOR (NN) DETAILS:
  Nearest BIN URI: BOLD:AAA2371 Average Distance: 0.2% (p-dist)
  Member Count: 182 Maximum Distance: 0.82% (p-dist)
  Nearest Member: GBMIN95560-17 Distance Variance: 0.03% (p-dist)
  Nearest Member Taxonomy: Chordata, Actinopterygii, Salmoniformes, Salmonidae, Salmoninae, Oncorhynchus, Oncorhynchus kisutch 
 
  TAXONOMY:
  Phylum:
Chordata [387]
  Class:
Actinopterygii [310]
  Order:
Salmoniformes [310]
  Family:
Salmonidae [310]
  Subfamily:
Salmoninae [297]
Coregoninae [1]
  Genus:
Oncorhynchus [297]
Prosopium [1]
  Species:
Oncorhynchus tshawytscha [294]
Oncorhynchus kisutch [2]
Prosopium cylindraceum [1]
  Subspecies:

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  DISTANCE DISTRIBUTION:
 
  PUBLICATIONS:
  Rasmussen,RS,Rosalee S;Morrissey,MT,Michael T;Hebert,PD,Paul D N DNA barcoding of commercially important salmon and trout species (Oncorhynchus and Salmo) from North America. Journal of Agricultural and Food Chemistry 2009-09-23;57(18):8379-8385 (PDF)
  Mitchell A, Rothbart A, Frankham G, Johnson RN, Neaves LE. Could do better! A high school market survey of fish labelling in Sydney, Australia, using DNA barcodes. PeerJ 2019-06-14;7(e7138):1 (PDF)
  Günther, Babett; Michael J. Raupach; Thomas Knebelsberger Full-length and mini-length DNA barcoding for the identification of seafood commercially traded in Germany Food Control 2016-10-16;73(Part B):922–929 (PDF)
  Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
  J. April, R. L. Mayden, R. H. Hanner and L. Bernatchez Genetic calibration of species diversity among North America's freshwater fishes Proceedings of the National Academy of Sciences 2011-06-13;108(26):10602-10607 (PDF)
  Nicolas Hubert, Robert Hanner, Erling Holm, Nicholas E. Mandrak, Eric Taylor, Mary Burridge, Douglas Watkinson, Pierre Dumont, Allen Curry, Paul Bentzen, Junbin Zhang, Julien April and Louis Bernatchez Identifying Canadian Freshwater Fishes through DNA Barcodes PLoS ONE 2008-06-18;3(6):e2490 (PDF)
  Dirk Steinke, Tyler S. Zemlak, James A. Boutillier and Paul D. N. Hebert DNA barcoding of Pacific Canadas fishes Marine Biology 2009-09-01;156(12):2641-2647 (PDF)
  Cooper, Jason K.; Sykes, Greg; King, Steve; Cottrill, Karin; Ivanova, Natalia V.; Hanner, Robert; Ikonomi, Pranvera Species identification in cell culture: a two-pronged molecular approach. In Vitro Cellular and Developmental Biology - Animal 2007-10-13;43(10):344-351 (PDF)
  Catherine W. Mecklenburg, Peter Rask Møller and Dirk Steinke Biodiversity of arctic marine fishes: taxonomy and zoogeography Marine Biodiversity 2010-12-01;41(1):109-140 (PDF)
 
  TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
 

 
 
  HAPLOTYPE NETWORK:
Color & Label Scheme: 
 
 
  COLLECTION LOCATION:
  Countries:
Exception - Culture - [1]
United States - [289]
New Zealand - [7]
Canada - [61]
Germany - [3]
Australia - [1]
Pacific Ocean - [8]
 
 
  DATA MANAGERS:
  Public Data: Private Data:
  Robert Hanner - [71]
Rosalee S Hellberg - [230]
Sujeevan Ratnasingham - [13]
Student Portal Manager - [2]
Melanie V. Roy - [4]
Babett Guenther - [3]
Nicolas Hubert - [8]
Dirk Steinke - [12]
Jason Cooper - [2]
Sharon A. Appleyard - [2]
Heather E. Braid - [11]
Robert Hanner - [7]
Peter E. Miller - [1]
Janet Topan - [3]
Amanda M. Naaum - [1]
Matt Lemay - [7]
Evgeny V. Zakharov - [3]
Neil Rooney - [1]
Rachel A. Breese - [2]
Matthew RJ Morris - [1]
Dirk Steinke - [3]
 
 
BIN COMPLIANT WITH METADATA REQUIREMENTS

Specimen Images:
  DSFAL239-07 {Oncorhynchus tshawytscha}
  License:
  License Holder:

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Food Product









ORGOS1
ORGOS1 in bag
Lateral














CCDB-ST01420


Unspecified




CCDB-ST01235



Collection Sites:

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Attribution:
Specimen Depositories:
*unvouchered - [1]
American Type Culture Collection - [1]
Auckland University of Technology - [9]
Biodiversity Institute of Ontario - [17]
Biodiversity Institute of Ontario, Informatics Department - [1]
CSIRO, Australian National Fish Collection - [3]
California Academy of Sciences - [1]
Centre for Biodiversity Genomics - [1]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [3]
Hakai Institute - [7]
Mined from GenBank, NCBI - [13]
Museum of New Zealand Te Papa Tongarewa - [4]
Oceana - [71]
Oregon State University - [214]
Richmond Secondary School - [6]
Royal British Columbia Museum - [6]
Royal Ontario Museum - [6]
The Boston Globe - [1]
U.S. Food and Drug Administration, Office of Regulatory Affairs, Pacific Regional Laboratory Northwest - [16]
University of Guelph - [3]
University of New England - [1]
 
Sequencing Centers:
Biodiversity Institute of Ontario - [335]
Canadian Centre for DNA Barcoding - [1]
Chapman University - [16]
Generic Commercial Labs - [2]
Macrogen Inc., Korea - [9]
National Research Council (NRC) Saskatoon - [4]
 
Photography:
CBG Photography Group - [21]
Catherine Mecklenburg - [1]
Dirk Steinke/Tyler Zemlak - [6]
Hakai Institute, Terrestrial BioBlitz - [7]
Spencer Walker - [1]
 
Collectors:
Andrea Cantor - [3]
B. A. Holladay - [1]
B.C. - [1]
Babett Guenther - [3]
C. W. Mecklenburg - [1]
Carolyn Bergstrom - [1]
Credit Valley Conservation: Holm - [1]
Daniel - [3]
Department of Fisheries and Oceans - [2]
Dianne Saenz - [1]
E. - [1]
Fisheries and Oceans Canada - [1]
G Yearsley (CSIRO) - [2]
Jim Boutillier - [1]
Joel - [3]
K. Warner - [9]
Katy Hind - [4]
Ken Fong - [4]
Kim Warner - [1]
Kimberly Warner - [3]
Micaiah Simanan - [1]
Nate Roop - [1]
Nick - [3]
Nutrasource Diagnostics Inc. (Kevin Yan) - [1]
Oceana - [56]
Organic Oceans - [2]
Pacific Biological Station - [1]
Robert Devlin - [8]
Sanford - [4]
Sayed - [3]
Tim - [3]
Unknown - [1]
 
Specimen Identification:
BOLD ID Engine - [2]
Babett Guenther - [3]
Carl Struthers - [4]
Catherine W. Mecklenburg - [1]
Chris D. Weland - [13]
Dennis Rutherford - [1]
E. Holm - [4]
Gordon Yearsley - [3]
Katy R. Hind - [4]
Kimberly A. Warner - [48]
Mark Stoeckle - [3]
Martin Krkosek - [1]
Student - [2]
Victoria Campbell - [10]
 
Sequencing Support:
Canadian Barcode of Life Network - [10]
International Barcode of Life (WG1.1) - [2]
 
 

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