The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [422]
United States - [112]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [262] Mat Seidensticker - [1] Jeremy deWaard - [151] Sujeevan Ratnasingham - [7] Jen E Bayer - [1] Jean-Francois Landry - [14] Alex Smith - [26] Lifescanner Team - [1] Ramya Manjunath - [1] Carlo Seifert - [2] Scott E. Miller - [3] Beverly Mcclenaghan - [5] Chris Looney - [2] Ellen H. Yerger - [1] Karen W Wright - [1] Kimberley Shropshire - [4] John Brown - [6] Rachel A. Breese - [2] Gregory R. Pohl - [2]
CBG Project Management Team - [14] Daniel Handfield - [1] Reza Zahiri - [1] Jeremy deWaard - [7] Lifescanner Team - [1] Carlo Seifert - [6] Evgeny V. Zakharov - [1] Doo-sang Park - [1] Paul D.N. Hebert - [1] Kelsey J Mcgurrin - [13] Jing V Leong - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
TAMIC313-10 {Choristoneura rosaceana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Animal and Plant Quarantine Agency, Plant Quarantine Technology Center - [1]
Biology Centre of the Czech Academy of Sciences, Institute of Entomology - [10]
Canadian Food Inspection Agency - [1]
Canadian Forest Service, Atlantic Forestry Centre - [20]
Canadian Forest Service, Northern Forestry Centre - [2]
Canadian Forest Service, Pacific Forestry Centre - [11]
Canadian National Collection of Insects, Arachnids and Nematodes - [16]
Centre for Biodiversity Genomics - [296]
Centre for Biodiversity Genomics, Informatics Department - [2]
Indiana University of Pennsylvania - [1]
MPG Ranch - [1]
Mined from GenBank, NCBI - [8]
Research Collection of Beverly Mcclenaghan - [3]
Research Collection of D. Holden - [1]
Research Collection of Daniel Handfield - [106]
Research Collection of Jen and Hilary Bayer - [1]
Research Collection of Jeremy deWaard - [4]
Research Collection of John Brown - [1]
Research Collection of M. Alex Smith - [6]
Royal British Columbia Museum - [3]
Smithsonian Institution, National Museum of Natural History - [6]
Texas A&M University, College Station - [1]
University of Delaware - [4]
University of Guelph - [19]
University of Maryland - [14]
Washington State Department of Agriculture - [2]
Sequencing Centers:
Animal and Plant Quarantine Agency, Plant Quarantine Technology Center - [1] Canadian Centre for DNA Barcoding - [2] Centre for Biodiversity Genomics - [492]
Photography:
Brandon Laforest - [18] CBG Photography Group - [212] Carlo L. Seifert - [8] Chris Taylor or Kimberley Shropshire - [5] Daniel Handfield - [2] Hilary Lyttle - [1] Information Pending - [13] Jaclyn McCormick - [31] Jay Cosey - [7] Jay Cossey - [6] Jean-Francois Landry - [14] Jeremy deWaard - [7] Kelsey McGurrin - [10] Kristen Mancuso - [1] Leptree project group - [1] Libby Avis - [2] LifeScanner User - [1] M. Volf - [2] Margaret E. Rosati - [3] Mark J. Dreiling - [2] Mat Seidensticker - [1] Richard Wilson - [10] Rick Turner - [6] Sarah Dykeman - [3] Silicon Valley Barcode of Life - [2] Spencer Walker - [2] Stephanie Kirk - [2] Young-suk - [1]
Collectors:
A. - [5] A. Li - [4] A. W. Thomas - [1] A. W.Thomas - [18] A.Borisenko - [18] A.Sritharan - [4] A.W.Thomas - [5] Abida Nasreen - [1] African Lion Safari Staff - [1] Allan Woodhouse - [1] B. McClenaghan - [5] BIO Collections - [2] BIO Collections Staff - [9] BIObus 2008 - [2] BIObus 2009 - [1] BIObus 2010 - [8] BIObus 2014 - [1] Biobus 2010 - [5] Biobus 2011 - [3] C. Ho - [1] C.S. - [3] CBG Collections - [1] CBG Collections Staff - [10] Chris Johnstone - [1] Chrystal Simon - [2] D Holden - [1] D Rubinoff - [2] D.Engelking - [2] D.Faser - [1] D.Lawrie - [1] Daniel Handfield - [104] David Holden - [1] Dawn Morva - [1] Don Marshall - [1] Douglas Tallamy - [4] E.Eveleigh - [20] ERC Project - [2] Ellen Yerger - [1] Evelyn Martin - [1] F.Lui - [2] F.Tremblay - [2] Fr. Royal` - [1] G. Blagoev - [1] Gergin Blagoev - [11] Gregg Walker - [1] Guppy - [3] Handfield D. - [2] Holden D. - [1] J. Bolling Sullivan - [1] J. Brown - [4] J. Derhousoff - [4] J. deWaard - [4] J.-F. Landry & V. Nazari - [1] J.Cossey - [13] J.Glaser - [1] J.Jimmo - [1] J.K.Morton - [1] J.McCormick - [4] J.R. - [2] J.Sones - [8] J.Straka - [4] J.V. Leong - [2] JF Landry - [3] Jamie Stevenson - [1] Janet Mercer - [2] Jean-Francois Landry - [9] Jeff Howard - [1] Jeremy deWaard - [5] Jim Ballantyne - [1] John W. Brown - [1] K. Perez - [2] K.Cox - [2] K.Greenham - [1] K.Kerr - [4] K.Perez - [14] Karin T. Burghardt - [10] Keith Pickthorn - [8] L Mavin & M Young - [18] L. Ramsay - [1] L.Attard - [1] L.Avis - [1] Li - [5] Libby Avis - [1] M. G. Pogue - [1] M. Pentinsaari - [1] M. Scofield - [1] M. Seidensticker - [1] M. Volf - [2] M.Brown - [2] M.Kekkonen - [2] MG Pogue - [1] Mark Dreiling - [6] Maxim Larrivee - [5] N. Jeffery - [4] N.Griffin - [1] Nicole Labine - [4] P. Kozel - [2] P. McCarthy - [20] P.D.N. Hebert - [1] Paul D.N. Hebert - [5] Paul Hebert - [40] Peter Himmel - [1] R Duncan - [10] R Duncan: D Manastyrski - [1] R.Avis - [1] R.Wilson - [4] Ray Scott - [1] Richard Wilson - [20] Rouge NUP BioBlitz Volunteers - [6] Ryan Gregory - [19] S. Pollock - [20] S.Devita - [12] S.McCubbin - [21] SVBOL - [1] Steve Scott - [6] T.Eagalle - [2] T.L. Schiefer - [1] Tim Nuttle - [1] `ERC Project - [1] deWaard - [2] rare BioBlitz collecting team - [3]
Specimen Identification:
Alex Smith - [6] Angela Telfer - [41] Anthony W. Thomas - [19] BOLD ID Engine - [9] Bong Kyu Byun - [1] Daniel Handfield - [106] Dick Wilson - [2] Eldon S. Eveleigh - [20] Eric H Lagasa - [2] Evgeny V. Zakharov - [2] Gergin A. Blagoev - [48] Jean-Francois Landry - [14] Jeremy deWaard - [2] John W. Brown - [3] Kate Perez - [22] Leland M. Humble - [11] Libby Avis - [2] Martin Volf - [2] Paul D.N. Hebert - [37] R. Duncan - [3] Renee Miskie - [1] Reza Zahiri - [1] Richard L. Brown - [1] Richard L. Wilson - [9] Steve Scott - [6] Tony Thomas - [5]