The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [50]
Denmark - [3]
United Kingdom - [12]
Germany - [5]
United States - [23]
Finland - [3]
France - [8]
Spain - [2]
North Macedonia - [1]
Netherlands - [2]
Russia - [1]
Georgia - [1]
Italy - [5]
Austria - [8]
Norway - [2]
Belarus - [2]
Sweden - [1]
Greece - [1]
DATA MANAGERS:
Public Data:
Private Data:
Markus Franzen - [1] Axel Hausmann - [6] CBG Project Management Team - [53] Peter Huemer - [8] Paul D.N. Hebert - [9] Jeremy deWaard - [22] Wolfgang Stark - [2] Brigitte Gottsberger - [1] Marko Mutanen - [3] Arild Johnsen - [2] Rodolphe Rougerie - [5] Camiel Doorenweerd - [2] Andreas Segerer - [1] Charles S Walker - [1] Antonio S. Ortiz - [2] Carlos Lopez-Vaamonde - [1] Ben W Price - [1]
Peter Huemer - [2] Reza Zahiri - [1] Mat Seidensticker - [1] Stefano Scalercio - [2] Carlos Lopez-Vaamonde - [2] Matthew P Besley - [2] Lyndall Pereira da Conceicoa - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LPVIA613-08 {Caradrina morpheus}
License:
CreativeCommons Attribution (2008)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [10]
Canadian National Collection of Insects, Arachnids and Nematodes - [5]
Centre for Biodiversity Genomics - [55]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [2]
Gastriklands Entomologiska Forening - [1]
Landesmuseum Kaernten - [2]
MPG Ranch - [1]
Mined from GenBank, NCBI - [1]
Natural History Museum, London - [11]
Naturalis Biodiversity Center - [2]
Research Collection of Bernard Dardenne - [1]
Research Collection of Carlos Lopez Vaamonde - [3]
Research Collection of Daniel Handfield - [2]
Research Collection of Herbert Hofmann - [2]
Research Collection of Jean Haxaire - [4]
Research Collection of Jeremy deWaard - [1]
Research Collection of Thomas Guggemoos - [1]
Research Collection of Wolfgang Stark - [2]
Royal British Columbia Museum - [2]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Tiroler Landesmuseum Ferdinandeum - [6]
Universidad de Murcia, Research Collection Biologia Animal - [2]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Oslo, Natural History Museum - [2]
University of Oulu, Zoological Museum - [3]
University of Vienna, Dept of Botany and Biodiversity Research - [1]
Wellcome Sanger Institute - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [110] LGC Genomics, Germany - [1] Naturalis Biodiversity Center - [2] University of Vienna, Dept of Botany and Biodiversity Research - [1]
Photography:
Alexandra Knapp - [5] Andreas Eckelt - [1] Brigitte Gottsberger - [2] CBG Photography Group - [16] Christian Wieser - [1] DNA barcoding facility - [2] Dr. Antonio S. Ortiz - [1] Elisabeth Frank - [2] G. Behounek - [1] G. Rotheneder - [2] Giuseppe Rijllo - [2] Hilary Lyttle - [1] Information Pending - [12] Jaclyn McCormick - [18] Jay Cossey - [1] Jean Haxaire - [4] Jeremy deWaard - [5] Jules Dessart-Pardon - [1] Kai Berggren - [2] Libby Avis - [4] Lotta Mörch - [1] Louison Cama - [1] M. Seidensticker - [1] Richard Wilson - [8] Rick Turner - [4] Rodolphe Rougerie - [1] Sanger BIOSCAN Team - [1] ZSM Photography Team - [2] photo work group Dr. Axel Hausmann - [3]
Collectors:
A. - [1] A. Hausmann - [2] A. Li - [9] Anttoni Mutanen - [1] Aud I. - [6] B. - [1] BIObus 2009 - [2] BIObus 2010 - [7] Bernard Dardenne - [1] CP 2387 - [1] CP 2387a - [1] Carlos Lopez Vaamonde - [3] Ch. - [2] Chrystal Simon - [1] Daniel Handfield - [2] Doorenweerd - [2] Dr Gavin R. Broad - [1] Dr. Andreas H. Segerer - [1] Fischer - [6] G. Anweiler - [2] G.M.Haggett - [1] Hofmann H. - [2] Holden D. - [1] Huemer P. - [4] Huemer P. & Tarmann G. M. - [1] J. Derhousoff - [9] J.J. Guerrero - [2] J.R. - [4] Jean Haxaire - [4] John Owen - [1] Jon Curson - [1] Kai Berggren - [1] Keith Pickthorn - [1] L Mavin & M Young - [8] L.Avis - [4] Lawniczak Mara - [1] Li - [1] M. Fibiger - [3] M. Franzen - [1] MRY 118 - [1] Marko Mutanen - [3] Mat Seidensticker - [1] NRL 0030 - [1] Nestori Mutanen - [1] OTL - [1] P. Schwarzbauer - [1] P.D.N. Hebert - [1] Panu Vaelimaeki - [2] Per-Eric Betzholtz - [1] R.Avis - [4] Rein-Arne Golf - [1] Richard Wilson - [22] Ron Moyes - [1] SMP 349 - [1] SPC 78 - [1] Salmon Jemma - [1] Stark W. - [2] Steidel A. and team leg. - [1] Svein Svendsen - [1] Tatsiana Lipinksaya - [2] Teltscher Fiona - [1] Thomas Guggemoos - [1] Wieser - [2] Wiesmair - [1] deWaard - [4]
Specimen Identification:
Andreas Segerer - [2] Antonio S. Ortiz - [2] Axel Hausmann - [4] BOLD ID Engine - [2] BOLD Identification System [2019] - [5] BOLD Identification System [] - [1] Benjamin Schattanek Wiesmair - [1] Bernard Dardenne - [1] Carlos Lopez-Vaamonde - [2] Christian Wieser - [2] David C. Lees - [1] Gavin R. Broad - [1] Gottfried Behounek - [1] Jean J. Haxaire - [4] Kai Berggren - [2] Konrad Fiedler - [1] Leland M. Humble - [1] Libby Avis - [4] Lotta AMELIE Moerch - [1] Marko Mutanen - [3] Markus Franzen - [1] Mathew Seidensticker - [1] Peter Huemer - [7] Reza Zahiri - [1] Richard L. Wilson - [4] Stefano Scalercio - [1] Wolfgang Stark - [2] Wouter Moerland - [2]