The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Bulgaria - [3]
Germany - [10]
Poland - [2]
Netherlands - [1]
Turkey - [1]
Bhutan - [1]
Portugal - [1]
Spain - [2]
Greece - [1]
Austria - [5]
Sweden - [1]
France - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jaakko L.O. Pohjoismaeki - [3] Marko Mutanen - [2] CBG Project Management Team - [3] Charles S Walker - [1] James E. O'Hara - [2] Sonia AF Ferreira - [1] Nikolaus U Szucsich - [5] Kencho Dorji - [1] Stefan Schmidt - [3] Bjoern Rulik - [2]
Canadian National Collection of Insects, Arachnids and Nematodes - [2]
Centre for Biodiversity Genomics - [3]
Mined from GenBank, NCBI - [1]
National Biodiversity Centre, Bhutan - [1]
Naturalis Biodiversity Center - [1]
Naturhistorisches Museum Wien - [5]
Research Center in Biodiversity and Genetic Resources - [1]
SNSB, Zoologische Staatssammlung Muenchen - [3]
Tampere Museum of Natural History - [2]
Universite de Montpellier - [1]
University of Oulu - [3]
Zoologisches Forschungsmuseum Alexander Koenig - [6]
Sequencing Centers:
Beijing Genomics Institute - [4] Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [14] Macrogen, Korea - [1] Naturalis Biodiversity Center - [1] SNSB, Zoologische Staatssammlung Muenchen - [2]
Photography:
CBG Photography Group - [2] Frank Stokvis - [1] Jaclyn McCormick - [2] Jenni Moilanen - [2] Kargl - [2] Naturalis DNA barcoding facility - [1] Perttu Anttonen - [3] Schoder S. - [2] Timothée Gonier - [1]
Collectors:
C.Bystrowski - [2] D. - [1] D. & Rennwald - [1] Doczkal - [2] Elias de Bree - [1] GBOL-Team ZFMK - [4] Hawlitschek & Mandrey - [1] Heimburg - [1] Helge - [1] I. Iliev - [1] Jaakko Pohjoismaeki - [2] K. - [1] Mehmet Duman - [1] Nikolaus - [2] P. Alvarez - [2] Rabl - [2] Rui Andrade - [1] Rulik et al - [2] Stefan - [2] Szucsich - [2] T. GONIER - [1] Tashi Lhamo - [1] W. van Steenis - [1] Z. Hubenov - [2]
Specimen Identification:
Anke Schaefer - [1] BOLD Identification System [2017] - [1] BOLD Identification System [] - [2] BOLD Machine Learning Tool Kit - [2] C. Bystrowski - [2] Christian F. Kassebeer - [1] Dieter Doczkal - [2] Elias De Bree - [1] Helge Heimburg - [1] Jaakko L.O. Pohjoismaeki - [2] Jaakko Pohjoismaki - [3] Juergen Kappert - [1] Nikolaus U Szucsich - [2] Oliver Hawlitschek - [1] Rui Andrade - [1] Stefan Rabl - [2] Timothee Gonier - [1] Zdravko Kirilov Hubenov - [2]