The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [1]
Germany - [22]
Canada - [24]
Norway - [10]
Netherlands - [2]
Belarus - [1]
Poland - [3]
United Kingdom - [216]
Russia - [1]
Romania - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [19] Bjoern Rulik - [5] Stefan Schmidt - [12] Torbjorn Ekrem - [2] Jere Kahanpaa - [1] Jade Savage - [1] Charles S Walker - [2] CBG Collections Unit - [2] Geir Soli - [1] Tomasz Mamos - [2] Marten Klinth - [1]
Lyndall Pereira da Conceicoa - [216] Oscar Vorst - [2] Thor H Ringsby - [6] Bjoern Rulik - [4] CBG Collections Unit - [4] Lujza Keresztes - [1] Stefan Schmidt - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
ROMAC2174-24 {Azelia cilipes}
License:
Creative CommonsAttribution Non CommercialShare Alike (2021)
Babes-Bolyai University, Department of Taxonomy and Ecology - [1]
Bishop's University - [1]
Centre for Biodiversity Genomics - [31]
Finnish Museum of Natural History, Zoological Museum - [1]
Mined from GenBank, NCBI - [2]
NTNU University Museum, Department of Natural History - [2]
Naturalis Biodiversity Center - [2]
SNSB, Zoologische Staatssammlung Muenchen - [13]
Station Linne - [1]
University of Lodz, Department of Invertebrate Zoology and Hydrobiology - [2]
University of Oslo, Natural History Museum - [1]
Wellcome Sanger Institute - [216]
Zoologisches Forschungsmuseum Alexander Koenig - [9]
Sequencing Centers:
Beijing Genomics Institute - [4] Centre for Biodiversity Genomics - [42] Naturalis Biodiversity Center - [2] SNSB, Zoologische Staatssammlung Muenchen - [1]
Photography:
CBG Photography Group - [4] CBG Robotic Imager - [11] Gunnhild Marthinsen - [1] Kárpáti Marcell - [1] Naturalis DNA barcoding facility - [1] Piia Partanen - [1] Sanger BIOSCAN Team - [143] Veronique Bellavance - [1]
Collectors:
Abigail Bailey - [3] Adam HILLIER - [2] Albert Knott - [1] Andrew BOARDMAN - [2] Andy Griffiths - [8] Andy Nisbet - [1] Angus McEwen - [4] Anita Barratt - [1] Ashleigh Whiffin - [3] B.Wijdeven - [8] BIOBus 2012 - [2] BIObus 2014 - [1] Baker Ellyn - [8] Barry Yates - [5] Betina Winkler - [1] Betty Asson - [4] Bill Urwin - [1] Blair McNicol - [1] Brigid Primrose - [2] C.Shrimpton - [1] Carol Taylor - [7] Cathy Hawes - [7] Charles R. Darwin - [1] Charlotte Targett - [1] Chrystal Simon - [1] D. - [6] D. Gavryushin - [1] D.Erasmus - [1] D.Huber - [1] David Hemprich-Bennett - [3] David O'Brien - [2] Deborah Beaumont - [54] Dick Belgers - [1] Doczkal - [6] E. Stur - [2] Eilidh Foulis - [1] Ella Sansom - [1] Ella Smith - [1] Ethel Aberg - [1] F.Koch - [1] Finn HARRIGAN - [2] Frank Morgan - [7] Fred Giles - [1] G. Sellmayer - [6] GBOL-Team ZFMK - [4] Geir Soli - [1] Gerecke - [1] Gill Banks - [7] Glenn Norris - [1] Hakai Team - [2] Heather Sunderland - [2] Isobel Wright - [2] J. - [6] James Allison - [1] Jason Shackleton - [4] Jere Kahanpaeae - [1] John Allsopp - [1] John Barratt - [1] Jones Laura - [11] Joop Prijs - [1] Kadmiel Maseyk - [4] Kirsty Hunter - [1] Kirsty LOCKWOOD - [2] Kylie Eichberg-Levitt - [1] Lars Ove Hansen - [1] Laura Jones - [11] Leia Zhao - [1] Leila T. Franzen - [11] Liam Crowley - [3] Lowe Abigail - [8] Lyndall Pereira da Conceicoa - [9] M.Brown - [1] Martyna Pasik - [2] Michael O'Shea - [1] Michelle Stamp - [8] Mike Ashworth - [1] N.Guujaaw - [1] Nadia Barsoum - [1] Neryse Mably - [11] O.Ermakov - [1] Paul Harris - [54] Penelope Whitehorn - [3] Rachel Short - [1] Remy Wood - [11] Ronni EDMONDS-BROWN - [2] Rory Andrews - [1] Rose-Marie Blair - [1] Rulik et al - [2] Rulik et al. - [2] S. & Voith - [6] S. Cannings - [1] S.Devita - [1] S.G.Cannings - [1] Sarah Smyth - [2] Schmidt - [6] Sneha Ravji - [4] Stephen Cartwright - [1] Steve Ryder - [7] Stuart Crawford - [3] Stuart Warrington - [5] T. Ekrem - [2] T.H. Ringsby and B.-E. Saether - [6] Terec A. - [1] Tom Williams - [1] Trevor DUBE - [2] V.Vekhnik - [1] Vlad Blagoderov - [2] Vladimir Blagoderov - [3] William Kunin - [22] students at Hersleb sec. School - [1]
Specimen Identification:
BOLD Identification System [2016] - [2] BOLD Identification System [2019] - [1] BOLD Identification System [2023] - [1] BOLD Identification System [] - [16] BOLD Machine Learning Tool Kit - [4] Dick Belgers - [1] Dieter Doczkal - [5] Jade Savage - [4] Joop Prijs - [1] Juergen Kappert - [4] Lujza Keresztes - [1] Marten Klinth - [1] Nikita Vikhrev - [1] Paul D.N. Hebert - [3] Renee Miskie - [7] Wolfgang Adaschkiewitz - [7]