The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [32]
Belgium - [5]
Finland - [7]
Denmark - [1]
Sweden - [1]
Russia - [32]
United States - [17]
China - [30]
Germany - [1]
Norway - [4]
India - [5]
Mongolia - [9]
Kyrgyzstan - [28]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Markus petri juhani Rantala - [8] Jason R Grant - [10] Peter Huemer - [44] CBG Collections Unit - [1] Marko J. Taehtinen - [3] Charles S Walker - [26] Jeremy deWaard - [8] Arild Johnsen - [4] Gunnar Brehm - [9] Marko Mutanen - [6] Rodolphe Rougerie - [6] Axel Hausmann - [3] CBG Project Management Team - [19] Kenneth H Stead - [1] Derek S. Sikes - [1] Mat Seidensticker - [1] Aibing Zhang - [18]
Vikas Kumar - [5] Guilin Hu - [13] Reza Zahiri - [1] Tara D. Gariepy - [3] Jason R Grant - [5] Marko J. Taehtinen - [1] Marko Mutanen - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
RDLQ699-07 {Euxoa ochrogaster}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre - [3]
Canadian National Collection of Insects, Arachnids and Nematodes - [2]
Capital Normal University, College of Life Sciences - [18]
Centre for Biodiversity Genomics - [20]
Finnish Museum of Natural History - [1]
Landesmuseum Kaernten - [10]
MPG Ranch - [1]
Mined from GenBank, NCBI - [25]
Phyletisches Museum Jena - [9]
Research Collection of Alberto Zilli - [1]
Research Collection of Daniel Handfield - [2]
Research Collection of David Demerges - [1]
Research Collection of Hannu Saarenmaa - [1]
Research Collection of Marko Taehtinen - [3]
Research Collection of Markus Rantala - [8]
Research Collection of Norbert Keil - [19]
Research Collection of Tom Sierens - [5]
SNSB, Zoologische Staatssammlung Muenchen - [3]
Tiroler Landesmuseum Ferdinandeum - [15]
University of Alaska Museum - [16]
University of Alberta, Strickland Museum of Entomology - [4]
University of Oslo, Natural History Museum - [4]
University of Oulu - [2]
University of Oulu, Zoological Museum - [5]
Zhengzhou University, Institute of Biodiversity and Ecology - [12]
Zoological Survey of India - [5]
Sequencing Centers:
Capital Normal University, College of Life Sciences - [18] Centre for Biodiversity Genomics - [90] Robarts Research Institute - [3] Zhengzhou University - [13]
Photography:
CBG Photography Group - [8] Casey Bickford - [1] Christian Wieser - [10] Ella Sippola - [3] G. Behounek - [1] Guilin Hu - [13] Gunnar Brehm - [9] Jaclyn McCormick - [11] Jason Grant - [15] Jean Haxaire - [1] Kai Berggren - [4] Kerstin Wehinger - [25] Libby Avis - [3] M. Seidensticker - [2] Marko Mutanen - [3] Marko Tähtinen - [1] Markus Rantala - [6] Megan Swan - [2] Miia Nikula - [1] Piia Partanen - [2] Toni Mayr - [3] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. K. Sanyal & M.Ali - [5] Aibing ZHANG - [18] Anttoni Mutanen - [1] Arlan Benn - [1] Aud I. - [4] BIObus 2010 - [10] Ch. - [10] D. - [2] D.: Lawrie - [1] Daniel Handfield - [2] Dr. D. Kolligs - [1] E. A. Beljaev - [1] Emma Sylvester - [2] Fischer - [4] Frode Odegaard - [2] Guilin Hu - [6] Hannu Saarenmaa - [1] Helmut Forster - [1] Henrik Bruun - [1] Huemer P. & Wiesmair B. - [6] J. Troubridge - [2] J.Troubridge - [1] Jason Grant - [15] Jyrki Suomi - [1] Kai Berggren - [1] Kate Stone - [1] Keil N. - [21] Keil Norbert und Verena - [1] Khishigdelger Enkhtur - [9] Korb S.K. - [2] Kullberg & Kaare - [1] L.Avis - [3] Lassi Jalonen - [1] M. Franzen - [1] Macaulay - [2] Marko Mutanen - [2] Marko Tahtinen - [3] Markus Rantala - [8] Mat Seidensticker - [1] May B. - [3] Mayr T. - [1] Nestori Mutanen - [1] Oddvar Hanssen - [2] Qiang GAO - [18] R.Avis - [3] Reidar Voith - [1] S. A. Huguet - [1] Schmidt & Dombroskie - [2] Seppo Poeykkoe - [1] Shaoxi Song - [6] Spence Lee - [2] Steidel A. and team leg. - [1] T. Sierens - [5] Tomi Mutanen - [2] Wieser - [10]
Specimen Identification:
Alberto Zilli - [1] Axel Hausmann - [1] BOLD Identification System [] - [1] Bernhard May - [3] Christian Wieser - [10] Crispin S. Guppy - [4] David Demerges - [1] Detlef Kolligs - [1] Gary G. Anweiler - [5] Gottfried Behounek - [1] Gunnar Brehm - [9] Huilin Han - [18] Jason R Grant - [15] Kai Berggren - [4] Laszlo Ronkay - [12] Libby Avis - [3] Marko J. Taehtinen - [4] Marko Mutanen - [6] Markus petri juhani Rantala - [8] Mathew Seidensticker - [1] Norbert Keil - [10] Peter Huemer - [9] Qian Zhao - [5] Shaoxi Song - [7] Tom Sierens - [5]