The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang WΓ€gele, Paul D.N. Hebert & BjΓΆrn Rulik Testing the Global Malaise Trap Program β How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [8]
Norway - [111]
Germany - [30]
Canada - [3]
Netherlands - [7]
Belarus - [1]
Portugal - [2]
United Kingdom - [26]
Russia - [1]
Romania - [4]
Sweden - [3]
Slovakia - [2]
Unrecoverable - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [5] Aina Aspaas - [2] Torbjorn Ekrem - [8] Bjoern Rulik - [2] Stefan Schmidt - [6] Sonia AF Ferreira - [1] Charles S Walker - [1] Jere Kahanpaa - [2] Ben W Price - [3] Matthew P Besley - [1] Marten Klinth - [3] CBG Collections Unit - [1]
Zuzana Ciamporova Zatovicova - [2] Oscar Vorst - [7] Thor H Ringsby - [100] Bjoern Rulik - [25] Matthew P Besley - [1] Lujza Keresztes - [4] Lyndall Pereira da Conceicoa - [21] Charles S Walker - [2] CBG Collections Unit - [1] Stefan Schmidt - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
ROMAC2522-24 {Norellisoma spinimanum}
License:
Creative CommonsAttribution Non CommercialShare Alike (2021)
Babes-Bolyai University, Department of Taxonomy and Ecology - [4]
Centre for Biodiversity Genomics - [107]
Finnish Museum of Natural History, Zoological Museum - [1]
Mined from GenBank, NCBI - [3]
NTNU University Museum, Department of Natural History - [10]
Natural History Museum, London - [5]
Naturalis Biodiversity Center - [7]
Research Center in Biodiversity and Genetic Resources - [1]
SNSB, Zoologische Staatssammlung Muenchen - [8]
Slovak Academy of Sciences, Plant Science and Biodiversity Centre - [2]
Station Linne - [3]
University of Turku, Zoological Museum - [1]
Wellcome Sanger Institute - [21]
Zoologisches Forschungsmuseum Alexander Koenig - [27]
Sequencing Centers:
Beijing Genomics Institute - [25] Centre for Biodiversity Genomics - [28] Naturalis Biodiversity Center - [7] SNSB, Zoologische Staatssammlung Muenchen - [2]
Photography:
Aina Maerk Aspaas - [1] CBG Photography Group - [1] CBG Robotic Imager - [10] CBG Robotic Rig - [2] Jancsó Boróka - [2] Kárpáti Marcell - [1] Meri Lähteenaro - [1] Mohsen Falahati-Anbaran - [1] Naturalis DNA barcoding facility - [1] Piia Partanen - [1] Portik Ráhel - [1] Sanger BIOSCAN Team - [16]
Collectors:
... - [1] Andrew J. Cunningham - [1] Anita Barratt - [6] Antti Haarto - [1] Barry Yates - [2] Ben Price - [2] Catalina Estrada Montes - [1] Charlotte Targett - [6] Chloe Salmon - [2] D. - [6] D.Iles - [3] Deborah Beaumont - [2] Dick Belgers - [4] Doczkal - [6] Dr Mike Ashworth - [1] Dr Tristan Bantock - [1] E. Stur - [8] Ethel Aberg - [2] F.Koch - [1] GBOL-Team ZFMK - [25] Geir Orsnes - [2] Gerecke - [1] J. - [6] Jaap van der Linden - [3] Jemma Salmon - [2] Jere Kahanpaeae - [1] John Barratt - [6] John Tweddle - [2] Jorgen Naalisvaara - [1] Keresztes L. - [4] Lawniczak Mara - [5] Lee McAlpin - [1] Marko Mutanen - [1] Mike Ashworth - [1] O.Ermakov - [1] Paul Harris - [2] Robert Wolton - [1] Rui Andrade - [1] Rulik et al - [1] S. & Voith - [6] S.Ferreira - [1] Salmon Jemma - [5] Sam Thomas - [2] Schmidt - [6] T. Ekrem - [8] T.H. Ringsby and B.-E. Saether - [100] Tatsiana Lipinksaya - [1] Teltscher Fiona - [5] V.Vekhnik - [1]
Specimen Identification:
Andrew J. Cunningham - [1] BOLD Identification System [2018] - [1] BOLD Identification System [2022] - [39] BOLD Identification System [] - [10] BOLD Machine Learning Tool Kit - [2] CBG Taxonomy Unit - [1] Christian F. Kassebeer - [4] Dick Belgers - [4] Geir Oersnes - [2] Hans-Georg Rudzinski - [16] Jaap Van Der Linden - [3] Jere Kahanpaa - [1] Jerome Moriniere - [6] Kaj Winqvist - [6] Lujza Keresztes - [4] Marten Klinth - [3] Mike Ashworth - [2] Renee Miskie - [62] Robert Wolton - [1] Rui Andrade - [1] Valerie Levesque-Beaudin - [3] Zoe Adams - [1]