The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Erena Dupont, Thierry Backeljau, Marc de Meyer and Stijn Desmyter Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France ZooKeys 2013-12-30;365:307-328 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [3]
Germany - [44]
Belgium - [1]
Netherlands - [7]
France - [1]
United Kingdom - [5]
Poland - [3]
Portugal - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jere Kahanpaa - [3] Stefan Schmidt - [5] Gontran Sonet - [1] Bjoern Rulik - [32] Sonia AF Ferreira - [1] Jade Savage - [1] Charles S Walker - [3] CBG Collections Unit - [1]
Oscar Vorst - [7] CBG Collections Unit - [2] Stefan Schmidt - [1] Bjoern Rulik - [4] Lyndall Pereira da Conceicoa - [4]
Finnish Museum of Natural History, Zoological Museum - [2]
Mined from GenBank, NCBI - [3]
National Institute of Criminalistics and Criminology, Belgium - [1]
Naturalis Biodiversity Center - [7]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Kaj Winqvist - [1]
SNSB, Zoologische Staatssammlung Muenchen - [7]
Wellcome Sanger Institute - [4]
Zoologisches Forschungsmuseum Alexander Koenig - [36]
Sequencing Centers:
Beijing Genomics Institute - [4] Centre for Biodiversity Genomics - [41] Naturalis Biodiversity Center - [7] Royal Belgian Institute of Natural Sciences - [1] SNSB, Zoologische Staatssammlung Muenchen - [1]
Photography:
Jenni Moilanen - [1] Naturalis DNA barcoding facility - [5] Piia Partanen - [2] Sanger BIOSCAN Team - [2] Veronique Bellavance - [1]
Collectors:
A.C. Pont - [1] Axel Hausman - [1] Belleuvre Nina - [1] D. - [1] Dick Belgers - [3] Doczkal - [1] Ester Konecna - [1] G. Sellmayer - [4] GBOL-Team ZFMK - [4] Jere Kahanpaeae - [2] Joop Prijs - [4] K. Winqvist - [1] Labo MIC - [1] Leia Zhao - [3] Liam Crowley - [1] Lyndall Pereira da Conceicoa - [3] Nadia Barsoum - [3] Rui Andrade - [1] Rulik et al - [28] Rulik et al. - [6]
Specimen Identification:
Adrian Pont - [1] BOLD Identification System [2019] - [8] BOLD Identification System [] - [30] Dieter Doczkal - [1] Hans-Georg Rudzinski - [4] J. Flinck - [1] Jere Kahanpaa - [1] Jerome Moriniere - [2] Joke A. Van Erkelens - [3] Kaj Winqvist - [1] Paul D.N. Hebert - [4] Rui Andrade - [1] Yves Braet - [1]