The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Jeremy R. deWaard, Paul D. N. Hebert and Leland M. Humble A Comprehensive DNA Barcode Library for the Looper Moths (Lepidoptera: Geometridae) of British Columbia, Canada PLoS ONE 2011-03-28;6(3):e18290 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [165]
United States - [24]
Finland - [11]
Germany - [19]
Italy - [12]
Iran - [5]
Russia - [14]
Hungary - [3]
Turkey - [5]
France - [14]
Portugal - [4]
United Kingdom - [14]
China - [2]
Croatia - [1]
North Macedonia - [1]
Norway - [2]
Austria - [9]
Czechia - [2]
Mongolia - [1]
Georgia - [4]
DATA MANAGERS:
Public Data:
Private Data:
Axel Hausmann - [64] Jeremy deWaard - [95] CBG Project Management Team - [85] Paul D.N. Hebert - [11] Jean-Francois Landry - [2] Charles S Walker - [2] Evgeny V. Zakharov - [2] Marko Mutanen - [5] Rodolphe Rougerie - [4] Peter Huemer - [10] Arild Johnsen - [2] Martin Sigut - [2] Sonia AF Ferreira - [2] Matt Lemay - [9] Gunnar Brehm - [1] Wolfgang Stark - [1] Vladimir A. Lukhtanov - [1] Ben W Price - [1] Nikolaus U Szucsich - [1] Matthew P Besley - [1] Carlos Lopez-Vaamonde - [1]
Leo Vahatalo - [4] Ellen H. Yerger - [1] Axel Hausmann - [2] Stefano Scalercio - [2] Peter Huemer - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LOWC755-05 {Biston betularia}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [17]
Centre for Biodiversity Genomics - [161]
Chinese Academy of Sciences, Institute of Zoology - [1]
College of Charleston - [1]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [2]
Croatian Natural History Museum - [1]
Indiana University of Pennsylvania - [1]
Landesmuseum Kaernten - [2]
Mined from GenBank, NCBI - [2]
Museum national d'Histoire naturelle - [2]
Natural History Museum, London - [2]
Naturhistorisches Museum Wien - [1]
Naturmuseum Suedtirol - [1]
Phyletisches Museum Jena - [1]
Research Center in Biodiversity and Genetic Resources - [2]
Research Collection of Alfred Haslberger - [1]
Research Collection of Antoine Leveque - [4]
Research Collection of Bernard Dardenne - [2]
Research Collection of Carlos Lopez Vaamonde - [1]
Research Collection of G. Sirloucomb - [5]
Research Collection of Gergely Petranyi - [1]
Research Collection of Jari-Pekka Kaitila - [4]
Research Collection of Jeremy deWaard - [1]
Research Collection of Joerg Gelbrecht - [4]
Research Collection of Martin Corley - [2]
Research Collection of Mustafa Kemal Hatay - [3]
Research Collection of N. Hall - [2]
Research Collection of Norbert Poell - [2]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [18]
SNSB, Zoologische Staatssammlung Muenchen - [37]
Saint Petersburg State University - [1]
Staatliches Museum fuer Naturkunde, Karlsruhe - [2]
Tiroler Landesmuseum Ferdinandeum - [8]
University of Alberta, Strickland Museum of Entomology - [1]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Maryland - [1]
University of Oslo, Natural History Museum - [2]
University of Ostrava - [2]
University of Oulu - [1]
University of Oulu, Zoological Museum - [4]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [292]
Photography:
Alexandra Knapp - [2] Bernd Muller - [8] CBG Photography Group - [139] Christian Wieser - [2] Dr. Axel Hausmann - [4] G. Rotheneder - [1] Giuseppe Rijllo - [2] Gunnar Brehm - [1] Hakai Institute, Terrestrial BioBlitz - [15] I.A. Makhov - [1] Information Pending - [2] Jaclyn McCormick - [21] Jari-Pekka Kaitila - [4] Jay Cossey - [4] Jean-Francois Landry - [2] Jeremy deWaard - [24] Jerome Moriniere - [2] Jules Dessart-Pardon - [1] Kai Berggren - [1] Kirchweger S - [1] Krsiten Mancuso - [1] Lepidoptera photo group - [3] Leptree project group - [1] Libby Avis - [1] Marko Mutanen - [1] Martin Sigut - [2] Nick Jeffery - [1] Piia Partanen - [1] Richard Wilson - [1] Rick Turner - [2] Rodolphe Rougerie - [2] Sara Wickham - [14] Y.Zou - [1] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [41] photo work group Dr. Axel Hausmann - [8]
Collectors:
A. Haslberger - [1] A. Hausmann - [8] A. Saldaitis - [1] A. W. Thomas - [5] A.Borisenko - [2] Adams - [2] Adrian J. Gardiner - [1] Ana Rita Goncalves - [1] Anssi Vahatalo - [2] Antoine LEVEQUE - [4] Aud I. - [7] B. Wybun - [1] B.C. Schmidt - [1] BIOBus 2012 - [1] BIObus 2008 - [7] BIObus 2009 - [4] BIObus 2010 - [2] Bernard Dardenne - [1] Brian G. Scholtens - [3] Buchner P. - [1] C. Di Marco - [1] C.Carr - [4] C.S. - [4] CP 1931 - [1] Carlos Lopez Vaamonde - [1] Ch. - [2] Charles Mitter and Andrew Mitchell - [1] Dr. Andreas H. Segerer - [1] Dr. Theo Gruenewald - [1] E. Schwabe & U. Oppel - [2] E.G. Munroe - [1] Eric Knight - [1] Evgeny Zakharov - [1] F. Can - [3] Fischer - [7] Floriani - [1] Franz Theimer - [2] G. Baldizzone - [1] G. Mueller - [2] G. Sirloucomb - [5] G.M.Haggett - [1] GAC 0177 - [1] Goueset V. - [1] Guppy - [4] H. Saarenmaa - [1] H.H. Cheng & J. Hanlon - [1] Herbert Noack - [2] Hervanek - [1] Hettie - [1] Huemer P. - [6] Huemer P. & Tarmann G. M. - [1] Hughes - [1] I. Mihoci - [1] I. Smith - [1] I.Makhov - [1] Infusino - [1] J. Barbut & R. Rougerie - [2] J. Bolling Sullivan - [1] J. Gelbrecht - [2] J. Gelbrecht & E. Schwabe - [2] J. Troubridge - [2] J.Cossey - [5] J.D. Lafontaine - [1] J.E.Cossey - [1] J.R. - [8] J.R.Straka - [1] J.Sones - [4] J.Straka - [4] James Hayden - [1] Jari Kaitila - [4] Jennifer Heron - [1] Jenny Heron - [4] Jim Ballantyne - [2] Joa - [1] John Owen - [2] John Reynolds - [4] Jon - [1] Jon & Sigrid - [2] Jon Curson - [1] K. Ambil - [2] K.B. Bolte - [3] K.Perez - [1] Keith Pickthorn - [73] Khishigdelger Enkhtur - [1] Kirchweger - [1] L Mavin & M Young - [2] L.Wallace - [4] Leah Ramsay - [1] Leah Ramsey - [3] Leif Aarvik - [2] Leo Vahatalo - [2] Libby Avis - [1] M. Corley - [2] M. Mutanen - [3] M. Ringler - [3] M. Vajdic - [1] MRY 37 - [1] Marko Mutanen - [4] Martin Corley - [2] Miller - [1] N. Hall - [2] N. Poell - [2] N. Zahm - [2] N.Jeffery - [4] N.W.Jeffery - [1] NRL 0029 - [1] OTL - [1] P. Drozd - [2] P.D.N. Hebert - [10] P.Vantanen - [2] Panu Vaelimaeki - [3] Paul Hebert - [12] Petranyi G. - [1] R. Yakovlev - [3] R.A. Layberry - [1] RAB 224 - [1] Rainer Busse - [1] Regina Rochefort - [1] Richard Wilson - [3] Rob Walker - [1] Ron Moyes - [1] Rui Andrade - [1] Rupp T. - [1] S. Erlacher - [1] S. Scalercio - [3] S.Devita - [1] S.McCubbin - [6] SPC 92 - [1] Saldaitis - [1] Scalercio - [1] Scott - [1] Shannon Dixon - [1] Shepard - [3] Sircoulomb & Dardenne - [1] Sonia Ferreira - [1] Stefan - [1] Sven Erlacher - [1] T. Mutanen - [2] U. Buchsbaum - [2] V. Gayk - [2] V. Tikhonov - [1] Wieser - [2] Y.Zou - [1] deWaard - [8] lgt. W.Stark - [1] local collector - [1]
Specimen Identification:
Adrian J. Gardiner - [1] Andreas Segerer - [2] Anthony W. Thomas - [5] Antoine Leveque - [4] Axel Hausmann - [49] BOLD ID Engine - [2] BOLD Identification System [2018] - [1] BOLD Identification System [] - [2] Bernard Dardenne - [2] Bernd Mueller - [4] Brian G. Scholtens - [1] Charles W. Mitter - [1] Christian Wieser - [2] Claudia Copley - [2] E. Antonova - [1] Evgeny V. Zakharov - [4] Feza Can - [3] Gunnar Brehm - [1] Ilya A Makhov - [1] Iva Mihoci - [1] J. Donald Lafontaine - [4] James B. Sullivan - [1] Jari Kaitila - [4] Jean-Francois Landry - [2] Jeremy deWaard - [5] Jerome Barbut - [2] Jon Shepard - [4] Leah Ramsey - [3] Leif Aarvik - [2] Leland M. Humble - [2] Libby Avis - [1] Lotta AMELIE Moerch - [1] Marko Mutanen - [5] Martin Corley - [2] Martin Sigut - [2] Norbert Poell - [2] Paul D.N. Hebert - [12] Peter Buchner - [1] Peter Huemer - [9] Richard L. Wilson - [1] Stefan Kirchweger - [1] Stefano Scalercio - [1] Wolfgang Stark - [1] Xue Dayong - [1]