The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Erena Dupont, Thierry Backeljau, Marc de Meyer and Stijn Desmyter Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France ZooKeys 2013-12-30;365:307-328 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Finland - [2]
Netherlands - [16]
Germany - [60]
Belgium - [1]
Norway - [1]
United Kingdom - [112]
France - [3]
Portugal - [2]
Georgia - [8]
Lebanon - [10]
Poland - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [18] Bjoern Rulik - [33] Torbjorn Ekrem - [1] Stefan Schmidt - [9] Jade Savage - [2] Jere Kahanpaa - [2] Gontran Sonet - [1] Charles S Walker - [2] Sonia AF Ferreira - [2]
Rodolphe Rougerie - [1] Andrea Pinos - [3] Bjoern Rulik - [16] Charles S Walker - [1] Lyndall Pereira da Conceicoa - [111] Oscar Vorst - [16]
Finnish Museum of Natural History, Zoological Museum - [2]
Julius-Maximilians-Universitat Wuerzburg - [3]
Mined from GenBank, NCBI - [3]
Museum national d'Histoire naturelle - [1]
NTNU University Museum, Department of Natural History - [1]
National Institute of Criminalistics and Criminology, Belgium - [1]
Naturalis Biodiversity Center - [16]
Research Center in Biodiversity and Genetic Resources - [2]
SNSB, Zoologische Staatssammlung Muenchen - [9]
Wellcome Sanger Institute - [111]
Zoologisches Forschungsmuseum Alexander Koenig - [57]
Sequencing Centers:
Beijing Genomics Institute - [16] Centre for Biodiversity Genomics - [47] Naturalis Biodiversity Center - [16] Royal Belgian Institute of Natural Sciences - [1]
Photography:
CBG Robotic Rig - [18] Naturalis DNA barcoding facility - [13] Noémie Brisbard - [1] Piia Partanen - [2] Sanger BIOSCAN Team - [103] Veronique Bellavance - [2]
Collectors:
A. C. Pont - [2] Abigail Bailey - [6] Albert Knott - [3] Andy Nisbet - [3] Antti Haarto - [1] Baker Ellyn - [4] Belleuvre Nina - [2] Betina Winkler - [3] Bill Urwin - [5] Blair McNicol - [1] Brigid Primrose - [1] Carol Taylor - [4] Cathy Hawes - [2] Charles R. Darwin - [1] Claire Carvell - [2] D. - [6] David Hemprich-Bennett - [6] David O'Brien - [1] Deborah Beaumont - [3] Dick Belgers - [2] Doczkal - [6] E. Stur - [1] Eilidh Foulis - [1] Ellie Grove - [2] Ester Konecna - [16] F.Koch - [2] Frank Morgan - [1] Fred Giles - [3] G. Sellmayer - [1] GBOL-Team ZFMK - [16] Gael Denny - [2] Gill Banks - [2] Glenn Norris - [1] Hans Huijbregts - [2] Ilia University & ZFMK - [8] J. - [6] James Allison - [1] Jere Kahanpaeae - [1] Johanna Asch - [3] John Allsopp - [1] Joke van Erkelens - [5] Jones Laura - [4] Joop Prijs - [7] Kirsty Hunter - [1] Konecna Ester - [18] Kylie Eichberg-Levitt - [1] Labo MIC - [1] Lawniczak Mara - [1] Leia Zhao - [39] Liam Crowley - [40] Linda Corterton - [2] Lowe Abigail - [4] Lucas Sire - [1] Lyndall Pereira da Conceicoa - [39] M. Macary - [10] Michael O'Shea - [3] Mike Ashworth - [3] Nadia Barsoum - [39] Nadine Mitschunas - [2] Neryse Mably - [4] Nichola Redding - [2] Paul Harris - [3] Penelope Whitehorn - [4] Rachel Short - [1] Remy Wood - [4] Rui Andrade - [2] Rulik et al - [29] Rulik et al. - [2] S. & Voith - [6] Salmon Jemma - [1] Sarah Smyth - [1] Schmidt - [6] Steve Ryder - [1] Stuart Warrington - [1] T. Ekrem - [1] Teltscher Fiona - [1] Tom Williams - [1] Vlad Blagoderov - [1] William Kunin - [1]
Specimen Identification:
Adrian Pont - [2] BOLD Identification System [] - [4] Dick Belgers - [2] Dieter Doczkal - [6] Hans Huijbregts - [2] Hans-Georg Rudzinski - [9] Jerome Moriniere - [2] Johanna Asch - [3] Joke A. Van Erkelens - [5] Joop Prijs - [7] Juergen Kappert - [5] Noemie Brisbard - [1] Paul D.N. Hebert - [3] Renee Miskie - [8] Rui Andrade - [2] Stephan Von Woikowsky - [2] Wolfgang Adaschkiewitz - [30] Yves Braet - [1]