The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [179]
Finland - [4]
Netherlands - [4]
United States - [28]
Japan - [1]
Germany - [43]
Bulgaria - [22]
Norway - [9]
France - [7]
Russia - [62]
Belarus - [15]
Portugal - [3]
Montenegro - [2]
Sweden - [7]
United Kingdom - [7]
Austria - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [187] Torbjorn Ekrem - [5] Mat Seidensticker - [21] Bjoern Rulik - [28] CBG Collections Unit - [23] Robin M. Floyd - [5] Alex Smith - [2] Beverly Mcclenaghan - [7] Piotr Gadawski - [2] Geir Soli - [2] Sonia AF Ferreira - [1] Jere Kahanpaa - [4] Charles S Walker - [2] Ben W Price - [3] Stefan Schmidt - [3] Matthew P Besley - [1] Marten Klinth - [5]
CBG Collections Unit - [71] Thor H Ringsby - [2] Evgeny V. Zakharov - [5] CBG Project Management Team - [2] Oscar Vorst - [4] Stefan Schmidt - [5] Bjoern Rulik - [6]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
FIDIP4330-14 {Anthomyia procellaris}
License:
CreativeCommons Attribution NonCommercial No Derivatives (2014)
Finnish Museum of Natural History, Zoological Museum - [4]
Mined from GenBank, NCBI - [2]
NTNU University Museum, Department of Natural History - [5]
Natural History Museum, London - [4]
Naturalis Biodiversity Center - [4]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [3]
SNSB, Zoologische Staatssammlung Muenchen - [9]
Station Linne - [5]
University of Lodz, Department of Invertebrate Zoology and Hydrobiology - [2]
University of Oslo, Natural History Museum - [2]
Zoologisches Forschungsmuseum Alexander Koenig - [34]
Sequencing Centers:
Beijing Genomics Institute - [6] Centre for Biodiversity Genomics - [205] Naturalis Biodiversity Center - [4] SNSB, Zoologische Staatssammlung Muenchen - [5]
Photography:
Alex Knapp - [1] Alexandra Knapp - [1] CBG Photography Group - [4] CBG Robotic Imager - [75] CBG Robotic Rig - [8] Chad Whitmell - [1] Dawn Williams - [2] Grace Bannon - [2] Jaclyn McCormick - [1] Jerome Moriniere - [1] Maria Faticov - [3] Megan Swan - [1] Naturalis DNA barcoding facility - [2] Piia Partanen - [2] Spencer Walker - [1]
Collectors:
A. - [1] A.Voronkov - [4] Abida Nasreen - [1] Aleksandra Jablonska - [2] Alex Smith - [2] Amy Brunning - [1] Andrew Bunting - [1] Andrzej Zawal - [2] Anna Carlemalm - [1] Antti Haarto - [3] Axel Hausman - [3] B. McClenaghan - [7] BIO Collections - [5] BIO Collections Staff - [18] BIO Team - [1] BIOBus 2012 - [1] BIObus 2010 - [1] BIObus 2013 - [2] BIObus 2014 - [5] Belleuvre Nina - [3] Brenden Bertrand - [1] C.S. Guppy - [44] C.Sobel - [1] C.Vandermeer - [1] CBG Collections - [1] CBG Collections Staff - [12] D. - [4] D.Crossland - [1] Darrin Bausch - [2] David Servos - [1] Deirdre Kerdraon - [2] Dick Belgers - [2] Doczkal - [4] Dr Anthony G. Irwin - [1] Dr. Hammond - [1] E. Stur - [5] Erin Mutch - [1] F.Koch - [2] GBOL-Team ZFMK - [6] Heidi Brown - [2] I. Iliev - [15] J. Cossey - [1] J. M. Grosso-Silva & Rui Andrade - [1] J.Brewster - [1] J.Foster - [5] James Sones - [10] Jere Kahanpaeae - [1] Joke van Erkelens - [2] Jorgen Naalisvaara - [1] Julian Small - [3] Julie - [1] K. McCabe - [2] K.Cox - [2] K.Rowter - [1] Kara Layton - [3] L. & V. Penevi - [7] L. Janke - [2] L.Fraser - [5] Lars-Olof Grund - [2] Lawnduh - [3] M.Brown - [1] M.Otway - [1] Mat Seidensticker - [21] Maureen Asselin - [1] Maxim Larrivee - [1] Mike Richardson - [1] N.Perry - [1] Nicole Labine - [4] O.Ermakov - [58] Ove Sorlibraten - [1] Peter Nilsson - [1] Peter Rasberry - [1] Philip Hebert - [3] R.Pojar - [8] Rachal Fretz - [1] Regina Rochefort - [1] Renu Tiwana - [1] Rodolphe Rougerie - [4] Rulik et al - [22] Rulik et al. - [5] S.Carriere - [2] S.Ferreira - [2] S.Miller - [2] S.Monckton - [1] Stephanie Church - [4] Stone Barns Center - [4] Svein Svendsen - [1] T. Ekrem - [5] T.Bleakley - [1] T.Davison - [1] T.F.Mitterboeck - [1] T.H. Ringsby and B.-E. Saether - [2] Tammy Nelson - [1] Tatsiana Lipinksaya - [15] Thomas Zechmeister - [2] Tyler Zemlak - [4] V.Junea - [1] V.Vekhnik - [58] Vlado Pesic - [2] ZfB & Ssymank - [1]
Specimen Identification:
Angela Telfer - [19] Anthony G. Irwin - [1] Antti Haarto - [2] BOLD Machine Learning Tool Kit - [2] Dick Belgers - [2] Hans-Georg Rudzinski - [6] J. Flinck - [1] Jere Kahanpaa - [1] Jeremy deWaard - [1] Jerome Moriniere - [3] Joke A. Van Erkelens - [2] Julian Small - [3] Kate Perez - [223] Marten Klinth - [5] Monica R. Young - [3] Renee Miskie - [9] Rui Andrade - [1] Stefan Schmidt - [2] Sujeevan Ratnasingham - [3] Valerie Levesque-Beaudin - [28] Wolfgang Adaschkiewitz - [7]