The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Pentinsaari, Mikko; Hebert, Paul D. N.; Mutanen, Marko Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences PLoS ONE 2014-09-25;9(9):e108651 (PDF)
Jingchan Hu, Mikko Pentinsaari, Paul D.N. Hebert Measuring mass: variation among 3,161 species of Canadian Coleoptera and the prospects of a mass registry for all insects PeerJ 2022-01-21;1(1):12 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Björn Rulik, Jonas Eberle, Laura von der Mark, Jana Thormann, Manfred Jung, Frank Köhler, Wolfgang Apfel, Andreas Weigel, Andreas Kopetz, Jonas Köhler, Frank Fritzlar, Matthias Hartmann, Karl Hadulla, Joachim Schmidt, Thomas Hörren, Detlef Krebs, Florian Theves, Ute Eulitz, André Skale, Dirk Rohwedder, Andreas Kleeberg, Jonas J. Astrin, Matthias F. Geiger, J. Wolfgang Wägele, Peter Grobe & Dirk Ahrens Using taxonomic consistency with semi‐automated data pre‐processing for high quality DNA barcodes Methods in Ecology and Evolution 2017-05-29;8(12):1878-1887 (PDF)
JULIE LEROY, JEAN-DAVID CHAPELIN-VISCARDI, GUÉNAËLLE GENSON, JULIEN HARAN, ÉRIC PIERRE and JEAN-CLAUDE STREITO Distinct barcodes for the Cereal leaf beetles Oulema melanopus and Oulema duftschmidi (Coleoptera: Chrysomelidae), two syntopical sibling species EUROPEAN JOURNAL OF ENTOMOLOGY 2020-12-21;117:490-503 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Germany - [12]
Canada - [12]
Finland - [5]
United States - [6]
Norway - [2]
France - [2]
DATA MANAGERS:
Public Data:
Private Data:
Stefan Schmidt - [6] Vasily V. Grebennikov - [3] Patrice Bouchard - [7] Mikko Pentinsaari - [5] CBG Project Management Team - [2] Bjoern Rulik - [6] Frode Odegaard - [2] Student Portal Manager - [1] Jean claude Streito - [2] Charles S Walker - [7]