Please note: BOLD Systems will be offline for a scheduled system update and upgrade on Thursday Jun 27, 2024 from 2:30 pm to 5pm EDT. In addition, analysis tools will be unavailable starting at noon until the end of the maintenance.
You've been logged out. Click here to log back in.
The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [23]
Germany - [1]
Sweden - [2]
Denmark - [1]
United States - [1]
Austria - [1]
Italy - [6]
France - [2]
DATA MANAGERS:
Public Data:
Private Data:
Chris Looney - [1] Carlos Lopez-Vaamonde - [2] Peter Huemer - [4] Stefano Scalercio - [1] Marko Mutanen - [3] CBG Project Management Team - [23] Axel Hausmann - [1]
Axel Hausmann - [1] Stefano Scalercio - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LPVIA475-08 {Acrobasis tricolorella}
License:
CreativeCommons Attribution (2008)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [2]
Research Collection of Carlos Lopez Vaamonde - [2]
Research Collection of Theo Gruenewald - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Tiroler Landesmuseum Ferdinandeum - [4]
University of Oulu, Zoological Museum - [3]
Washington State Department of Agriculture - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [34]
Photography:
Carlos Lopez-Vaamonde - [1] Giuseppe Rijllo - [1] Jaclyn McCormick - [20] Jules Dessart-Pardon - [1] Lepidoptera photo group - [1] Libby Avis - [3] Marko Mutanen - [3] Stefano Scalercio - [1] ZSM Photography Team - [1]
Collectors:
A. Hausmann - [1] Carlos Lopez Vaamonde - [2] Eric LAGASA - [1] F. Vilhelmsen - [1] Huemer P. - [4] Kari Nupponen - [2] L Mavin & M Young - [20] L.Avis - [3] R.Avis - [3] SCALERCIO-INFUSINO - [1] T. Gruenewald - [1]
Specimen Identification:
Axel Hausmann - [2] Carlos Lopez-Vaamonde - [1] Libby Avis - [3] Marko Mutanen - [3] Peter Huemer - [4] Stefano Scalercio - [1] Tiara YASMEEN Hensel - [1] W. Hellman - [1]