The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Jingchan Hu, Mikko Pentinsaari, Paul D.N. Hebert Measuring mass: variation among 3,161 species of Canadian Coleoptera and the prospects of a mass registry for all insects PeerJ 2022-01-21;1(1):12 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sikes, D.S., M. Bowser, J. M. Morton, C. Bickford, S. Meierotto, K. Hildebrandt. Building a DNA barcode library of Alaska’s non-marine arthropods Genome 2016-10-21;60(3):248-259 (PDF)
Pentinsaari, Mikko; Hebert, Paul D. N.; Mutanen, Marko Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences PLoS ONE 2014-09-25;9(9):e108651 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Björn Rulik, Jonas Eberle, Laura von der Mark, Jana Thormann, Manfred Jung, Frank Köhler, Wolfgang Apfel, Andreas Weigel, Andreas Kopetz, Jonas Köhler, Frank Fritzlar, Matthias Hartmann, Karl Hadulla, Joachim Schmidt, Thomas Hörren, Detlef Krebs, Florian Theves, Ute Eulitz, André Skale, Dirk Rohwedder, Andreas Kleeberg, Jonas J. Astrin, Matthias F. Geiger, J. Wolfgang Wägele, Peter Grobe & Dirk Ahrens Using taxonomic consistency with semi‐automated data pre‐processing for high quality DNA barcodes Methods in Ecology and Evolution 2017-05-29;8(12):1878-1887 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [39]
Germany - [39]
United States - [71]
Netherlands - [2]
Estonia - [1]
Finland - [6]
France - [6]
Spain - [1]
Denmark - [1]
Croatia - [5]
Norway - [1]
Austria - [7]
Poland - [1]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jess Vickruck - [2] CBG Project Management Team - [26] Sara H Paull - [66] Patrice Bouchard - [3] Alex Smith - [7] Stefan Schmidt - [11] Derek S. Sikes - [2] Mikhail V. Kozlov - [1] Charles S Walker - [16] Mikko Pentinsaari - [7] Steffen Roth - [1] Bjoern Rulik - [7] Peter Huemer - [1] Jeremy deWaard - [1] Student Portal Manager - [1] Mat Seidensticker - [2] Carlos Lopez-Vaamonde - [1] Nikolaus U Szucsich - [3]
Stefan Schmidt - [4] Oscar Vorst - [2] Michael J. Raupach - [10] Elfie Perdereau - [1] Stephan Koblmueller - [3] Bjoern Rulik - [2] Matthew P Besley - [1] Charles S Walker - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
COPFC003-14 {Carabus nemoralis}
License:
CreativeCommons Attribution (2014)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Agriculture and Agri-Food Canada, Fredericton Research and Development Centre - [2]
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [3]
Carnegie Museum of Natural History - [4]
Centre for Biodiversity Genomics - [28]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [6]
Institut de Recherche sur la Biologie de l'Insecte - [1]
Mined from GenBank, NCBI - [17]
NEON Biorepository at Arizona State University - [46]
National Ecological Observatory Network, United States - [16]
Natural History Museum, London - [1]
Naturalis Biodiversity Center - [2]
Private Collection of Dominik Rabl - [3]
Research Collection of Carlos Lopez Vaamonde - [1]
SNSB, Zoologische Staatssammlung Muenchen - [15]
Tiroler Landesmuseum Ferdinandeum - [1]
Universalmuseum Joanneum, Graz - [3]
University of Alaska Museum - [2]
University of Bergen, Natural History Collections - [1]
University of Guelph - [7]
University of New England - [1]
University of Oulu - [1]
University of Oulu, Zoological Museum - [7]
Zoologisches Forschungsmuseum Alexander Koenig - [13]
Sequencing Centers:
Beijing Genomics Institute - [3] Carl von Ossietzky Universitat Oldenburg - [3] Centre for Biodiversity Genomics - [118] Centre for Biodiversity Genomics, Informatics Department - [1] Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [3] Generic Commercial Labs - [1] Institut de Recherche sur la Biologie de l'Insecte - [1] Macrogen, Korea - [6] Naturalis Biodiversity Center - [2] Pisces Molecular - [13] SNSB, Zoologische Staatssammlung Muenchen - [4]
Photography:
Alex Cobb - [1] Alex Smith - [7] Andreas Eckelt - [1] BFB handling team - [4] Blevins, KK and Travers, PD - [16] CBG Photography Group - [1] Carlos Lopez Vaamonde - [1] Casey Bickford - [1] Derek Sikes - [1] Elfie Perdereau - [2] Gautier Baudry - [2] Gunczy Johanna - [3] Jaclyn McCormick - [7] Jaclyn McCormick/ Megan Swan - [2] Jenni Moilanen - [1] L. Burrell - [2] Mira Niemela - [1] Naturalis DNA barcoding facility - [2] Paivi Tanner - [2] Piia Partanen - [2] Rabl - [1] Rebekka Schueller - [3] Steffen Roth - [1]
Collectors:
A.Smetana - [1] Alex Cobb - [1] Anne Fitzky - [1] B.F.Carr - [2] BIO Collections Staff - [1] BIObus 2009 - [3] BIObus 2013 - [12] BIObus 2014 - [7] C. Fruetel & J. Hall - [7] C. Vandermeer - [7] Carlos Lopez Vaamonde - [1] Dezene Huber - [2] Dominik - [3] Eckelt A. - [1] Eilish Engelbert - [2] F. - [4] GBOL-Team ZFMK - [9] Goff - [1] Gunczy - [2] Hendrich - [1] Ian Higgins - [2] J. Vickruck - [2] J.L.Carr - [2] Johanna - [2] K.E.Hein - [1] Koehler - [4] L. - [1] L. Lamb and L. Dworshak - [1] Lisa Poirier - [2] M. - [1] M. Alex Smith - [7] M. Franzen - [1] M. Raupach - [1] Mat Seidensticker - [2] Mikko Pentinsaari - [6] N. N. - [2] N.N. - [4] NEON Technician - [16] National Ecological Observatory Network - [50] O.Vorst - [2] Paill - [1] R. - [4] Rabl - [3] Reinhard - [1] S.McCubbin - [7] Sami Haapala - [1] Tapio van Ooik - [1] United States - [50] W. Lorenz - [2] Weichselbaumer - [2] Weidlich - [5] Wolfgang - [1] Z.Smetana - [1] rare BioBlitz collecting team - [1] unknown - [3]
Specimen Identification:
Alex Smith - [7] Andreas Eckelt - [1] BOLD Identification System [2020] - [2] BOLD Identification System [] - [21] Carlos Lopez-Vaamonde - [1] Derek S. Sikes - [2] Detlef Krebs - [2] Dezene P.W. Huber - [2] Dominik Rabl - [3] Dorothy Lyle - [1] Elfie Perdereau - [1] Erwin Weichselbaumer - [2] Frank Koehler - [9] Jerome Moriniere - [2] Jess Vickruck - [2] Joachim Schmidt - [1] Karsten Hannig - [5] Manfred Jung - [2] Matthias Hartmann - [4] Michael Franzen - [1] Michael J. Raupach - [5] Mikhail V. Kozlov - [1] Mikko Pentinsaari - [7] NEON Technician - [40] Oscar Vorst - [2] Renee Miskie - [1] Robert Davidson - [10] Steffen Roth - [1] Student - [1] W. Moore - [16] Wolfgang Lorenz - [1] Wolfgang Paill - [3] Yves Bousquet - [6]