The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
D Steinke, SL deWaard, JE Sones, NV Ivanova, SWJ Prosser, K Perez, TWA Braukmann, M Milton, EV Zakharov, JR deWaard, S Ratnasingham, PDN Hebert Message in a Bottle—Metabarcoding enables biodiversity comparisons across ecoregions GigaScience 2022-04-28;11(1):11 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [136]
United States - [16]
Germany - [10]
Japan - [2]
Netherlands - [5]
Finland - [3]
Norway - [7]
France - [12]
Russia - [3]
United Kingdom - [11]
Portugal - [1]
Denmark - [1]
Georgia - [10]
Austria - [5]
Slovakia - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [118] Jeffrey H Skevington - [10] Lars Hendrich - [2] Torbjorn Ekrem - [1] Gunilla Stahls - [3] Geir Soli - [3] CBG Collections Unit - [6] Nikolaus U Szucsich - [3] Ladislav Roller - [1] Dezene P.W. Huber - [2] Cuong Q Tang - [1] Rodolphe Rougerie - [7] Beverly Mcclenaghan - [1] Ximo Mengual - [7] Sonia AF Ferreira - [1] Mikko Pentinsaari - [1] Charles S Walker - [2] Helge M Heimburg - [2] Mat Seidensticker - [5] Marten Klinth - [1]
Jeffrey H Skevington - [12] Lars Hendrich - [5] Oscar Vorst - [5] Matthew P Besley - [3] Lyndall Pereira da Conceicoa - [4] Andrew Lucas - [3] Bjoern Rulik - [8] CBG Collections Unit - [8] CBG Project Management Team - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
TTMDJ555-10 {Chalcosyrphus nemorum}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian National Collection of Insects, Arachnids and Nematodes - [22]
Centre for Biodiversity Genomics - [138]
Finnish Museum of Natural History, Zoological Museum - [1]
Landesmuseum Kaernten - [2]
Mined from GenBank, NCBI - [2]
Museum national d'Histoire naturelle - [7]
NTNU University Museum, Department of Natural History - [3]
National Museum Wales - [3]
Natural History Museum, London - [4]
Naturalis Biodiversity Center - [5]
Naturhistorisches Museum Wien - [3]
Norwegian University of Science and Technology - [1]
Private Collection of Iiro Kakko - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Kaj Winqvist - [1]
SNSB, Zoologische Staatssammlung Muenchen - [7]
Slovak National Museum, Natural History Museum - [1]
Station Linne - [1]
University of Oslo, Natural History Museum - [3]
Wellcome Sanger Institute - [4]
Zoologisches Forschungsmuseum Alexander Koenig - [16]
Sequencing Centers:
Beijing Genomics Institute - [7] Centre for Biodiversity Genomics - [104] Macrogen, Europe - [1] Microsynth AG - [1] Naturalis Biodiversity Center - [5] SNSB, Zoologische Staatssammlung Muenchen - [5] Swansea University - [3]
Photography:
A Lucas - [2] A. Lucas - [4] CBG Photography Group - [12] CBG Robotic Imager - [5] CBG Robotic Rig - [18] Chad Whitmell - [8] Erik Bostrom - [1] Grace Bannon - [1] Helge Heimburg - [4] Jaclyn McCormick - [1] Jay Cossey - [1] Julien Piolain - [3] Kellyn Hawley - [1] Kristian B. Kristiansen - [3] Marek Semelbauer - [1] Megan Swan - [3] Naturalis DNA barcoding facility - [1] Piia Partanen - [2] Rene Chabot - [2] Sanger BIOSCAN Team - [2] Schoder S. - [2] Spencer Walker - [3] Thomas Lebard - [4] Timaeus - [2]
Collectors:
A. - [1] A.Borisenko - [1] Aija White - [8] Amy - [1] Anderson - [1] Austin; Laine - [4] B. McClenaghan - [1] B. Sharp - [1] B.J.Sinclair - [2] BIO Collections - [3] BIO Collections Staff - [6] BIOBus 2012 - [10] BIObus 2014 - [1] Baker - [4] Bill Urwin - [2] C.Shrimpton - [1] CBG Collections Staff - [40] Catherine Wassmansdorf - [1] Cavan Harpur - [1] Clayton Syfchuk - [1] D. - [4] D. & Ssymank - [1] D.Erasmus - [1] D.Huber - [1] D.Mazerolle - [1] Diana Phan - [1] Doczkal - [5] Duane Brown - [1] F. Odegaard - [1] F.Tremblay - [1] Frans Olofsson - [1] Fred Giles - [2] GBOL-Team ZFMK - [8] GGBC members et al. - [5] Grant Peregoodoff - [1] Heimburg H. - [2] I.Carmichael - [1] Iiro Kakko - [1] Ilia University & ZFMK - [1] J. Hughes - [1] J. Jones - [1] J. Skevington - [6] J.Cossey - [1] J.H - [2] J.H. Skevington - [5] J.Jimmo - [1] J.Klymko - [3] James Sones - [9] Jenna McQuire - [1] Jere Kahanpaeae - [1] Jeremiah Garber - [1] Jeroen van Steenis - [1] Jesse - [4] John T. Smit - [1] Josh Palumbo - [1] Julia G. Betz - [1] K. McCabe - [1] K. Moran - [2] K. Winqvist - [1] K.Greenham - [1] K.Perez - [1] Kevin Moran - [1] Kraus/ v. d. Dunk - [1] L. Janke - [1] L.Attard - [1] Lee McAlpin - [1] Lorin - [2] M. Falck - [3] M. Semelbauer - [1] M.Brown - [11] M.Wood - [2] Mackenzie Howse - [2] Mat Seidensticker - [5] Maxim Larrivee - [1] Mengual - [2] Menno Reemer - [3] Mike Ashworth - [2] Mr Andy Murdock - [3] Nikolaus - [1] Parks Canada - [1] Paul Hebert - [6] Pete - [1] Philomena Bonis - [1] R.Reid - [1] Rui Andrade - [1] S Plummer - [3] S. Cannings - [1] S. Dahle - [3] S.McCubbin - [1] S.Robinson - [3] Sander Bot - [2] Stephanie Church - [2] Stone Barns Center - [1] Stuart Warrington - [1] Szucsich - [1] Thomas Lebard - [4] Thomas Lebard & Marie Canut - [3] Timaeus - [2] Tomislav Terzin - [1] V. MacPhail & A. McGraw-Alcock - [4] W. Schacht - [1] X. - [2]
Specimen Identification:
Aija F White - [8] Andre Reimann - [7] Andrew Lucas - [3] Andy Murdock - [3] Axel Ssymank - [1] BOLD ID Engine - [10] BOLD Identification System [2015] - [1] BOLD Identification System [2017] - [44] BOLD Identification System [2018] - [2] BOLD Identification System [2019] - [2] BOLD Identification System [2020] - [4] BOLD Identification System [2023] - [3] BOLD Identification System [] - [9] Bernd Nickel - [1] Christian F. Kassebeer - [3] Dieter Doczkal - [5] Elisabeth Stur - [1] Helge M Heimburg - [2] Iiro Kakko - [1] J. Klymko - [3] Jeffrey H Skevington - [8] Jere Kahanpaa - [1] Jeremy deWaard - [1] Jeroen Van Steenis - [1] John T. Smit - [1] Kaj Winqvist - [1] Kevin Moran - [2] Lorin Timaeus - [2] M. Semelbauer - [1] Mackenzie Howse - [2] Marten Klinth - [1] Menno Reemer - [3] Morten Falck - [3] Nikolaus U Szucsich - [1] Renee Miskie - [2] Roger K. A. Morris - [1] Rui Andrade - [1] Sander Bot - [3] Thomas Lebard - [7] Valerie Levesque-Beaudin - [24] Victoria Macphail - [4] Wolfgang Schacht - [2] Ximo Mengual - [2]