The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [253]
United States - [23]
Portugal - [2]
Finland - [2]
Germany - [21]
Netherlands - [1]
Pakistan - [2]
China - [2]
Poland - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [233] Alex Smith - [7] Ana C.O. Farinha - [1] Jade Savage - [5] Jere Kahanpaa - [2] Bjoern Rulik - [1] Beverly Mcclenaghan - [16] Stefan Schmidt - [9] Scott E. Miller - [4] Sonia AF Ferreira - [1] CBG Collections Unit - [11]
Charles S Walker - [3] Oscar Vorst - [1] Bjoern Rulik - [11] CBG Project Management Team - [2]
Finnish Museum of Natural History, Zoological Museum - [2]
Mined from GenBank, NCBI - [3]
Naturalis Biodiversity Center - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [10]
SNSB, Zoologische Staatssammlung Muenchen - [9]
Smithsonian Institution, National Museum of Natural History - [4]
Universidade de Lisboa, Faculdade de Ciencias - [1]
Widener University - [1]
Zoologisches Forschungsmuseum Alexander Koenig - [12]
Sequencing Centers:
Beijing Genomics Institute - [11] Centre for Biodiversity Genomics - [266] Naturalis Biodiversity Center - [1] SNSB, Zoologische Staatssammlung Muenchen - [1]
Photography:
Anais Renaud - [4] Asa Lind - [1] CBG Photography Group - [7] CBG Robotic Rig - [13] Jaclyn McCormick - [1] Jerome Moriniere - [1] Kate Koodrich - [1] Kristen Mancuso - [1] Maria Faticov - [2] Megan Swan - [1] Naturalis DNA barcoding facility - [1] Nicholas J. H. Silverson - [4] Rick Turner - [2] Spencer Walker - [6]
Collectors:
A.Borisenko - [1] Abida Nasreen - [4] Alex Smith - [7] Alina Mcmillan - [1] Amanda Middleton - [1] Ana C. O. Farinha - [1] Anne Parkhill - [1] Annette Nelson-Szpak - [4] B. McClenaghan - [16] B.McLean - [4] BIO Collections - [7] BIOBus 2012 - [1] Becky Nichols - [2] Becky Yeo - [2] CBG Collections Staff - [10] Cameron Morrison - [4] Carla Palangio - [23] Chris Johnstone - [1] Christine Gubesch - [2] Chrystal Simon - [1] Claire Gulliver - [1] Clayton Syfchuk - [1] Coreen Putman - [3] D. - [8] David Brown - [2] Dawn Morva - [1] Deanne Brandt - [1] Denise Cameron - [1] Doczkal - [8] Don Kemball - [2] Erin George-Samuel - [1] Erin McMillan - [4] GBOL-Team ZFMK - [11] Gerald Skillen - [2] Gergin Blagoev - [1] H.Stewart - [3] Hannah Kendrick - [2] Heidi Brown - [1] Heidi Paterson - [4] J. - [8] J. Cossey - [3] J.-F. Jette - [1] J.Cossey - [1] J.H - [1] James Sones - [2] Jamie - [1] Jeff Baty - [2] Jen - [3] Jenna McQuire - [1] Jere Kahanpaeae - [1] JoEllen Jensen - [2] Joan Marshall - [3] John Pollock - [5] John Winfield - [1] Joop Prijs - [1] Julia Wild - [1] K. Goodrich - [1] K.Perez - [1] Katherine Armstrong - [1] Kerry Brown - [1] Kevin Klassen - [10] Kim Oppertshauser - [2] Kimorie Lees - [8] Kirby England - [2] Kristina J. Anderson - [4] L. Jolicoeur - [3] L.Gardiner - [2] Leslie Barker - [1] Linda Phillips - [5] Lise Trudeau-Balcaen - [1] M.Brown - [3] M.Otway - [14] Margaret McLaughlin - [2] Maria Breton - [1] Mary-Ann Mitchler - [1] Michael Cottrill - [1] Michael D. Wilson - [1] Michael Graham - [1] Michelle Gibbs - [4] Morgan Wyatt - [1] N.Dudley - [1] Naila Nazir Khan - [2] Natasha Charpentier - [2] Nicole Killam - [1] Pam Ryznar - [5] Parks Canada Staff - [1] Patrick Martens - [1] Paul Hebert - [7] Peter Rasberry - [1] Peter Tarleton - [6] Podhorna J. et al. - [1] R.Owchar - [2] Ray Scott - [2] Rui Andrade - [1] Rulik et al - [1] S. & Voith - [8] S.McCubbin - [1] Samantha Williams - [1] Schmidt - [8] Scott Cates - [1] Scott E. Miller - [4] Shannon McLeod - [1] Stan Tiffin - [1] Stone Barns Center - [11] Suzanne Glasgow - [1] Tapani Jaervelaeinen - [1] Terry Saunders - [1] Tina Emili Volpini - [1] Tomislav Terzin - [3] Travis Carr - [1] Tyrone Sluymers - [1] Victoria Currie - [1] Zach Turner - [3]
Specimen Identification:
Ana C.O. Farinha - [1] BOLD ID Engine - [11] BOLD ID Run - [5] BOLD Identification System [2017] - [20] BOLD Identification System [2018] - [4] BOLD Identification System [2019] - [1] BOLD Identification System [2022] - [1] BOLD Identification System [] - [152] Dieter Doczkal - [8] H. Fremdt - [10] Hans-Georg Rudzinski - [1] J. Flinck - [2] Jade Savage - [6] Jeremy deWaard - [3] Jerome Moriniere - [1] Joop Prijs - [1] Paul D.N. Hebert - [13] Renee Miskie - [11] Rui Andrade - [1] Scott E. Miller - [4] Valerie Levesque-Beaudin - [13]