The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Jingchan Hu, Mikko Pentinsaari, Paul D.N. Hebert Measuring mass: variation among 3,161 species of Canadian Coleoptera and the prospects of a mass registry for all insects PeerJ 2022-01-21;1(1):12 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Sikes, D.S., M. Bowser, J. M. Morton, C. Bickford, S. Meierotto, K. Hildebrandt. Building a DNA barcode library of Alaska’s non-marine arthropods Genome 2016-10-21;60(3):248-259 (PDF)
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones and Evgeny V. Zakharov A Sequel to Sanger: amplicon sequencing that scales BMC Genomics 2018-03-27;19(219):0-0
D Steinke, SL deWaard, JE Sones, NV Ivanova, SWJ Prosser, K Perez, TWA Braukmann, M Milton, EV Zakharov, JR deWaard, S Ratnasingham, PDN Hebert Message in a Bottle—Metabarcoding enables biodiversity comparisons across ecoregions GigaScience 2022-04-28;11(1):11 (PDF)
Kathrin F. Stanger-Hall, James E. Lloyd and David M. Hillis Phylogeny of North American fireflies (Coleoptera: Lampyridae): implications for the evolution of light signals. Molecular Phylogenetics and Evolution 2007-10-01;45(1):33-49 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [554]
United States - [32]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [484] Claudia Copley - [6] Matt Lemay - [9] CBG Collections Unit - [18] Lifescanner Team - [1] Derek S. Sikes - [3] Beverly Mcclenaghan - [3] Charles S Walker - [16] Sarah Adamowicz - [13] Patrice Bouchard - [11] Vasily V. Grebennikov - [3] Alex Smith - [8] Student Portal Manager - [2] Rachel A. Breese - [1] Ellen H. Yerger - [1]
Charles S Walker - [4] CBG Project Management Team - [11] CBG Collections Unit - [12]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
SMTPS879-16 {Ellychnia}
License:
CreativeCommons Attribution (2016)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian National Collection of Insects, Arachnids and Nematodes - [15]
Centre for Biodiversity Genomics - [537]
Centre for Biodiversity Genomics, Informatics Department - [1]
Indiana University of Pennsylvania - [1]
Mined from GenBank, NCBI - [9]
Research Collection of Beverly Mcclenaghan - [2]
Research Collection of M. Alex Smith - [2]
Royal British Columbia Museum - [13]
Simon Fraser University, Burnaby - [2]
Smithsonian Institution, National Museum of Natural History - [2]
University of Alaska Museum - [3]
University of Guelph - [2]
University of Manitoba, Wallis Roughley Museum of Entomology - [4]
University of New England - [2]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [2] Centre for Biodiversity Genomics - [456] Generic Commercial Labs - [2]
Photography:
Alexus Bobak, Alec Wentz, M. Emma Bland - [3] CBG Photography Group - [43] CBG Robotic Rig - [24] Christina Dressel - [2] Jaclyn McCormick - [27] Kristen Mancuso - [4] Kyle Hall - [2] Kyndall Hildebrandt - [3] Lena Van Seggelen - [5] LifeScanner User - [2] Morgan Roblin - [2] Nick Jeffery - [1] R.Turner - [2] Sara Wickham - [14] Spencer Walker - [5] Vasily Grebennikov - [3] Vicki Salo - [1]
Collectors:
A.Borisenko - [2] A.Sritharan - [2] Adam Brittain - [1] Alex Smith - [4] Alina Mcmillan - [4] Allan Woodhouse - [11] Anik Chevalier - [1] Arctic & Boreal Entomology - [1] B. McClenaghan - [3] B.F.Carr - [7] B.Titaro - [1] BIO Collections - [1] BIO Collections Staff - [25] BIOBus 2012 - [5] BIObus 2008 - [10] BIObus 2009 - [5] BIObus 2010 - [12] BIObus 2013 - [14] BIObus 2014 - [2] BIObus 2015 - [1] BIObus: A.Borisenko - [1] Becky Nichols - [3] Benjamin - [2] Bernard Martin - [12] Bill Laubscher - [1] Brenden Bertrand - [1] Bruce A. Bennett - [1] C. - [3] C. Vandermeer - [1] C. Warne - [1] C.D`Orsay - [2] C.Englehart - [2] CBG Collections Staff - [76] CBH staff - [10] Catherine Wassmansdorf - [2] Cavan Harpur - [4] Chantal - [3] Chris Johnstone - [33] Christina Dressel - [1] Claudia Copley - [2] D.M.Wood - [1] Darren Copley - [2] Darrin Bausch - [5] Deborah Diebel - [2] Derek S. Sikes - [1] Dino Aguirre - [1] Ed Stewart - [1] Ellen H. Yerger - [1] F.Tremblay - [24] Gergin Blagoev - [5] Hakai Institute - [1] J. Cossey - [7] J. Jones - [4] J. Knopp - [1] J. Murphy - [1] J. Reimer - [2] J. deWaard - [1] J.Cossey - [2] J.L.Carr - [7] J.Lankshear - [1] J.McGowan - [1] J.R.Vockeroth - [1] J.Smith - [1] James Sones - [2] Jeff Baty - [1] Jeff Howard - [20] Jennifer Heron - [5] Jeramie Jenkins - [1] Jeremiah Garber - [3] Jeremy DeWaard - [1] Jeremy deWaard - [3] Jim Altemus - [1] Joel Gibson - [1] John Pollock - [1] Josh Palumbo - [10] Jozef Slowik - [1] K. McCabe - [1] K. Olive - [1] K.Greenham - [1] K.Kerr - [5] K.Perez - [2] K.Rowter - [1] Kat - [1] Kevin Pitt - [1] Kim Riehl - [2] Korneyev - [2] Kristina J. Anderson - [4] L. Janke - [1] L.Attard - [1] L.LeSage - [2] L.Stepanovic - [1] Larson - [1] Linda Thomas - [1] M. Mcphee - [3] M. Roblin - [3] M.Alperyn - [3] M.Milton - [1] MA Smith - [4] Maples - [1] Matt Bowser - [1] Medo Toure - [22] Melissa Randle - [4] Meridith White - [1] Michael C. Tyree - [1] Michael D. Wilson - [1] Mikko Pentinsaari - [3] Monica R. Young - [1] Natalie De Ruysscher - [3] Nathalie Morin - [1] P.G.Kevan - [5] Park Staff - [3] Parks Canada Staff - [36] Patrick Martens - [5] Paul Ayles - [25] Paul D.N. Hebert - [1] Paul Hebert - [11] Peter Tarleton - [1] Philip Davis - [3] Philomena Bonis - [1] R.A.Cannings - [5] R.E.Roughley - [2] R.Labbee - [1] Randi Mulder - [1] Rouge NUP BioBlitz Volunteers - [1] S. Cannings - [9] S. Espinola - [3] S. McCubbin - [1] S.G.Cannings - [3] S.McCubbin - [2] S.Miller - [1] S.Ratnasingham - [1] Sarah C. Johnson - [1] Severyn - [1] Severyn; Maples - [1] Shirley Butland - [20] Steve Wells - [6] Susan Lawson - [1] Swales - [1] T. Schmitt - [3] Timoth J. Tomon - [1] Tyler Zemlak - [6] V. MacPhail & A. McGraw-Alcock - [1] V. Salo - [1] V.Levesque-Beaudin - [1] Vasily V. Grebennikov - [1] Vince Cloward - [1] rare BioBlitz collecting team - [1]
Specimen Identification:
Alex Smith - [3] Andrew B. T. Smith - [5] BOLD ID Engine - [3] BOLD Identification System [2017] - [77] BOLD Identification System [2018] - [11] BOLD Identification System [2019] - [12] BOLD Identification System [2020] - [2] BOLD Identification System [2023] - [2] BOLD Identification System [] - [369] Christopher Ernst - [5] Claude Chantal - [3] Claudia Copley - [4] Derek S. Sikes - [3] Ellen H. Yerger - [1] Gergin A. Blagoev - [8] Paul D.N. Hebert - [3] Renee Miskie - [8] Student - [2] Thomas S. Woodcock - [12] Tomislav Terzin - [2] Victoria Macphail - [1]