The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [4]
Germany - [11]
United States - [1]
Finland - [3]
Italy - [2]
Norway - [7]
Bulgaria - [1]
Austria - [4]
Slovenia - [1]
France - [5]
DATA MANAGERS:
Public Data:
Private Data:
Torbjorn Ekrem - [4] Jeremy deWaard - [2] John Brown - [1] Marko Mutanen - [3] CBG Project Management Team - [3] Andreas Segerer - [3] Charles S Walker - [2] Bjoern Rulik - [3] Axel Hausmann - [5] Peter Huemer - [3] Arild Johnsen - [1] Wolfgang Stark - [1] Carlos Lopez-Vaamonde - [3] Nikolaus U Szucsich - [1]
May Bente Brurberg - [2] Wolfgang Stark - [1] Carlos Lopez-Vaamonde - [2]
Canadian Forest Service, Pacific Forestry Centre - [1]
Centre for Biodiversity Genomics - [3]
Landessammlungen Niederosterreich - [1]
Mined from GenBank, NCBI - [2]
NTNU University Museum, Department of Natural History - [4]
Naturmuseum Suedtirol - [1]
Norwegian Institute for Agricultural and Environmental Research - [2]
Research Collection of Carlos Lopez Vaamonde - [5]
Research Collection of Jeremy deWaard - [1]
Research Collection of Kai Berggren - [1]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [8]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [3]
University of Oulu, Zoological Museum - [3]
Zoologisches Forschungsmuseum Alexander Koenig - [3]
Sequencing Centers:
Centre for Biodiversity Genomics - [30] GATC Biotech AG - [2]
Photography:
Carlos Lopez Vaamonde - [1] Erik Bostrom - [3] Even Sannes Riiser - [3] G. Rotheneder - [2] Jaclyn McCormick - [3] Jeremy deWaard - [1] Jules Dessart-Pardon - [2] Kai Berggren - [1] Libby Avis - [1] Lotta Mörch - [1] Louison Cama - [1] Megan Swan - [1] Stephanie Kirk - [1] Wiesmair - [1] ZSM Photography Team - [3] photo work group Dr. Axel Hausmann - [4]
Collectors:
A. - [1] A. Hausmann - [3] Aagaard - [2] Benjamin; Schattanek-Wiesmair - [1] Carl Fredrik - [1] Carlos Lopez Vaamonde - [5] Dr. Andreas H. Segerer - [2] E. Stur - [1] Hausmann - [2] Huemer P. - [3] K. - [2] Kai Berggren - [1] L Mavin & M Young - [1] L. & V. Penevi - [1] L.Avis - [1] Li - [1] Luehr - [1] Marko Mutanen - [3] Monica Trondhjem - [1] Panu Vaelimaeki - [1] Petra - [1] R Duncan - [1] R.Avis - [1] Rudi Tannert - [1] Rulik et al - [3] Schattanek-Wiesmair - [1] Sverre Kobro - [2] T. Ekrem - [1] USDA/APHIS - [1] lgt. W.Stark - [2]
Specimen Identification:
Andreas Segerer - [5] Axel Hausmann - [3] BOLD Identification System [2019] - [1] BOLD Identification System [] - [4] Benjamin Schattanek Wiesmair - [1] Carlos Lopez-Vaamonde - [3] Jean-Francois Landry - [1] Kai Berggren - [4] Libby Avis - [1] Marko Mutanen - [3] Peter Huemer - [3] R. Duncan - [1] Ronald W. Hodges - [1] Sverre Kobro - [2] Tiara YASMEEN Hensel - [2] Wolfgang Stark - [2]