The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
Vassileva, L.V., Lozanova, L., Marinov, M.P., Morinière, J., Neov, B., Nikolov, B.P., Simov, N., Klayn, S. Prey availability and diet composition of the Grey plover (Pluvialis squatarola) during migration on the South-Western Black Sea coast, Bulgaria Food Webs 2024-12-01;41(1):e00373 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [99]
Germany - [80]
Sweden - [3]
Switzerland - [5]
Netherlands - [3]
Belarus - [6]
Bulgaria - [2]
France - [4]
Portugal - [1]
Israel - [1]
Italy - [2]
Austria - [4]
Pakistan - [6]
Lebanon - [20]
Russia - [1]
Poland - [6]
Romania - [1]
Denmark - [6]
Spain - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [29] Bjoern Rulik - [32] Rodolphe Rougerie - [1] Jade Savage - [7] Stefan Schmidt - [12] CBG Project Management Team - [10] Ben W Price - [5] Helena K. Wirta - [5] Gunnhild Marthinsen - [1] Charles S Walker - [2] Liliana V. Vassileva - [1] Sonia AF Ferreira - [1] Maria S. Unterkoefler - [1] Thibaud Decaens - [2] Tomasz Mamos - [6]
Lyndall Pereira da Conceicoa - [87] CBG Collections Unit - [17] Barcoding Naturalis - [3] Bjoern Rulik - [29] Stefan Schmidt - [1] Lujza Keresztes - [1]
Babes-Bolyai University, Department of Taxonomy and Ecology - [1]
Bavarian State Collection of Zoology - [20]
Bishop's University - [7]
Bulgarian Academy of Sciences, Institute of Biodiversity and Ecosystem Research - [1]
Centre for Biodiversity Genomics - [49]
Mined from GenBank, NCBI - [2]
Museum national d'Histoire naturelle - [1]
Natural History Museum, London - [5]
Naturalis Biodiversity Center - [3]
Research Center in Biodiversity and Genetic Resources - [1]
Swedish Museum of Natural History - [1]
Universite de Montpellier - [2]
University of Helsinki - [5]
University of Lodz, Department of Invertebrate Zoology and Hydrobiology - [6]
University of Veterinary Medicine, Vienna - [1]
Wellcome Sanger Institute - [87]
Zoologisches Forschungsmuseum Alexander Koenig - [61]
Sequencing Centers:
Bavarian State Collection of Zoology - [1] Beijing Genomics Institute - [29] Centre for Biodiversity Genomics - [64] LGC Genomics, Germany - [1] Naturalis Biodiversity Center - [3]