The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Valdez-Moreno, M.
Ivanova, N.V.
Elias-Gutierrez, M.
Pedersen, S.L.
Bessonov, K.
Hebert, P.D.N. Using eDNA to biomonitor the fish community in a tropical oligotrophic lake Bacalar PlosOne 2019-04-22;14(4):e0215505 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Belize - [72]
Curacao - [6]
Bahamas - [7]
Mexico - [3]
Dominica - [22]
Netherlands - [16]
Cayman Islands - [1]
Caribbean Sea - [2]
United States Virgin Islands - [1]
DATA MANAGERS:
Public Data:
Private Data:
Amy C. Driskell - [49] Lee Weigt - [1] Benjamin Victor - [32] Lourdes Vasquez-Yeomans - [5]
Thomas D Devine - [30] Amy C. Driskell - [12] Matthieu Leray - [1]
El Colegio de la Frontera Sur, Unidad Chetumal - [5]
Florida Museum of Natural History - [1]
Old Dominion University - [1]
Research Collection of Benjamin Victor - [32]
Smithsonian Institution - [20]
Smithsonian Institution, National Museum of Natural History - [71]
Sequencing Centers:
Centre for Biodiversity Genomics - [36] Smithsonian Institution - [8] Smithsonian Institution, National Museum of Natural History - [15] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [70]
Photography:
Benjamin Victor - [28] Jose Angel Cohuo - [1] Matthieu Leray - [1] Selene Morales - [1]
Collectors:
Amy Driskell - [2] B. Murphy - [1] Baldwin - [14] Barrett Brooks - [1] Benjamin Victor - [8] Bruce Brandt - [1] C. Baldwin - [28] Carlos Estape - [1] Carole Baldwin - [12] Cristina Castillo - [1] D. Smith - [20] Estrella Malca - [1] Foltz - [10] Ivan Castellanos Osorio - [2] J. Mounts - [18] Jose Angel Cohuo Colli - [1] Kent Carpenter - [1] L Lang - [1] L. Weigt - [27] Laetitia Plaisance - [1] Laura Carrillo Bibriezca - [3] Laurie Penland - [1] Lourdes Vasquez Yeomans - [1] Maggie Halloran - [9] Mark Little - [1] Matthieu Leray - [1] Mounts - [2] Ross Robertson - [1] Simon Brandl - [20] Skylar Miller - [3] Smith - [8] Sydney Rosebraugh - [1] Uriel Ordonez Lopez - [2] Weigt - [14]
Specimen Identification:
Benjamin Victor - [32] Carole C. Baldwin - [44] David G. Smith - [17] Kent E. Carpenter - [1] Lourdes Vasquez-Yeomans - [2] Matthieu Leray - [1] Selene Morales Gutierrez - [3]