The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Dirk Steinke, Jeremy R deWaard, Martin F Gomon, Jeffrey W Johnson, Helen K Larson, Oliver Lucanus, Glenn I Moore, Sally Reader, and Robert D Ward DNA barcoding the fishes of Lizard Island (Great Barrier Reef) Biodiversity Data Journal 2017-04-13;5:0-0
Nicolas Hubert
Agnès Dettai
Patrice Pruvost
Corinne Cruaud
Michel Kulbicki
Robert F. Myers
Philippe Borsa Geography and life history traits account for the accumulation of cryptic diversity among Indo-West Pacific coral reef fishes MARINE ECOLOGY PROGRESS SERIES 2017-11-16;583(1):179-193 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
French Polynesia - [5]
Seychelles - [1]
Australia - [1]
New Caledonia - [1]
Saudi Arabia - [14]
Wallis and Futuna - [2]
Yemen - [1]
DATA MANAGERS:
Public Data:
Private Data:
Benjamin Victor - [1] Christopher Meyer - [4] Seshnee Reddy - [1] CBG Project Management Team - [1] Charles S Walker - [17] Agnes Dettai - [1] Diane E. Pitassy - [2] Amy C. Driskell - [1]
Smithsonian Institution, National Museum of Natural History - [3]
South African Institute for Aquatic Biodiversity - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [3] Genoscope, Centre National de Sequencage - [1] Smithsonian Institution - [4] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [3]
Photography:
Benjamin Victor - [1] Jay Cossey - [1] Jeffrey T. Williams - [3]
Collectors:
AB - [1] Campagne Resicod - [1] Chris Meyer - [1] David Lecchini - [3] EH - [1] Erwan Delrieu-Trottin - [1] J. Williams & S. Planes - [2] Jeff Williams - [1] Jeffrey T. Williams - [4] Johann Mourier - [1] Julien Grignon - [4] KM - [1] M. Kulbicki - [1] MM - [1] P. Pruvost et al. - [1] PCH - [1] Pierre Sasal - [1] Rene Galzin - [4] Romain Causse - [4] Serge Planes - [5] Sergey Bogorodsky - [1] Vanessa Messmer - [4]
Specimen Identification:
Benjamin Victor - [1] Diane E. Pitassy - [1] Jeff Williams - [6] Nicolas Hubert - [1] Phillip C. Heemstra - [1]