The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [8]
Norway - [3]
United Kingdom - [4]
Germany - [17]
Finland - [3]
United States - [6]
Italy - [1]
Austria - [2]
Bulgaria - [2]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [8] Arild Johnsen - [2] Jeremy deWaard - [1] Paul D.N. Hebert - [3] Marko Mutanen - [3] CBG Project Management Team - [4] Chris Looney - [3] Andreas Segerer - [6] Axel Hausmann - [10] Charles S Walker - [1] Torbjorn Ekrem - [1] Peter Huemer - [2] Wolfgang Stark - [1] Matthew P Besley - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [5]
Centre for Biodiversity Genomics - [4]
Mined from GenBank, NCBI - [1]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [4]
Research Collection of D. Holden - [3]
Research Collection of Jeremy deWaard - [1]
Research Collection of Peter Lichtmannecker - [2]
Research Collection of Theo Gruenewald - [2]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [12]
Senckenberg Natural History Collections Dresden, Museum of Zoology - [1]
Tiroler Landesmuseum Ferdinandeum - [2]
University of Oslo, Natural History Museum - [2]
University of Oulu, Zoological Museum - [3]
Washington State Department of Agriculture - [3]
Sequencing Centers:
Centre for Biodiversity Genomics - [41] Natural History Museum, London - [1] Unknown - [1]
Photography:
Aarvik, Leif - [1] Erik Bostrom - [1] G. Rotheneder - [1] Jaclyn McCormick - [6] Jean-Francois Landry - [3] Jeremy deWaard - [1] Leif Aarvik - [1] Lepidoptera photo group - [3] Libby Avis - [1] Vazrick Nazari - [5] ZSM Hymenoptera Photography Group - [2] ZSM Photography Team - [1] photo work group Dr. Axel Hausmann - [6]
Collectors:
A. Hausmann - [10] Aarvik - [1] Alf Bakke - [1] Andreas Werno - [1] Atsalea Mutanen - [1] Carl Fredrik - [1] D Holden - [3] David Holden - [1] Dr Gavin R. Broad - [1] Dr. Andreas H. Segerer - [1] Dr. Theo Gruenewald - [2] Erlebach S. - [1] GAC 0251 - [1] GBOL-Team SNSD - [1] Huemer P. - [1] J.R. - [1] L. & V. Penevi - [2] Leif - [1] Libby Avis - [1] Luehr - [1] Marko Mutanen - [3] Meelika Mutanen - [1] Panu Vaelimaeki - [2] Patrik HERTZOG - [1] Peter Lichtmannecker - [2] RA Worth - [5] RAB 125 - [1] Rob Walker - [1] SPC 125 - [1] Sigurd Andreas - [1] Sylvia Mutanen - [1] deWaard - [1] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [9] Axel Hausmann - [7] BOLD ID Engine - [1] Eric H Lagasa - [2] F. Graf - [1] Gavin R. Broad - [1] Jean-Francois Landry - [8] Kai Berggren - [1] Kate Perez - [2] Leif Aarvik - [2] Libby Avis - [1] Marko Mutanen - [3] Peter Huemer - [1] S. Erlebach - [1] Wolfgang Stark - [1]