The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Adriana E. Radulovici, Bernard Sainte-Marie and France Dufresne DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional-scale approach Molecular Ecology Resources 2009-04-21;9(S1):181-187 (PDF)
K.M. Hultgren and J.J. Stachowicz Molecular phylogeny of the brachyuran crab superfamily Majoidea indicates close congruence with trees based on larval morphology. Molecular Phylogenetics and Evolution 2008-09-01;48(3):986-996 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [23]
Norway - [8]
North Sea - [12]
United States - [1]
Sweden - [4]
United Kingdom - [3]
Denmark - [1]
DATA MANAGERS:
Public Data:
Private Data:
Adriana Radulovici - [10] Charles S Walker - [1] Joana Matzen Silva - [2] CBG Collections Unit - [2] Michael J. Raupach - [11] CBG Project Management Team - [9] Katrine Kongshavn - [5] Aina Aspaas - [1] Student Portal Manager - [1] Kennet G Lundin - [1] Sofie Derycke - [1] Matthew P Besley - [3]
Raquel SM Pereira - [2] CBG Collections Unit - [1] CEBP Project - [1] Arlie H Mccarthy - [1] Charles S Walker - [1]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [11]
Flanders Research Institute for Agriculture, Fisheries and Food - [1]
Genome Sciences Centre - [1]
Goteborg Natural History Museum - [1]
Mined from GenBank, NCBI - [2]
NTNU University Museum, Department of Natural History - [2]
Natural History Museum, London - [3]
OCEANS NORTH, Ottawa - [1]
Universidade de Lisboa, Museu Nacional de Historia Natural - [2]
Universite du Quebec a Rimouski - [10]
University of Bergen, Natural History Collections - [4]
University of New England - [1]
Uppsala University, Department of Systematic Biology - [2]
Sequencing Centers:
Bangor University - [2] Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [38] Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [1] Flanders Research Institute for Agriculture, Fisheries and Food - [1] Generic Commercial Labs - [1] Natural History Museum, London - [3] Source BioScience - [1] Uppsala University, Department of Systematic Biology - [2]
Photography:
Adriana Radulovici - [1] Anja Thomann - [5] Arlie McCarthy - [5] CBG Photography Group - [3] Grethe Sundet Haugen - [1] Hans Hillewaert - [1] K. Kongshavn - [1] Kara Layton - [5] Katrine Kongshavn - [4] Kennet Lundin - [1] L. Ljungfeldt - [2] Michael Raupach - [5] Pristine Seas - [1] Rick Turner - [2] S. Kirk - [2] katrine Kongshavn - [2]
Collectors:
A. H. McCarthy - [1] Adriana Radulovici - [1] Bernard Sainte-Marie - [3] C. Landry - [1] Cape Race dive team - [8] Chris Fletcher - [3] Dr Lauren E. Hughes - [3] FMS course 2024 - [2] Grethe Sundet Haugen - [1] Hans Hillewaert - [1] Hermann Neumann - [5] J. I. Brian - [1] Jennie Knopp - [1] Joe Drew - [1] MAREANO - [1] Marie-Claude Marquis - [2] Mr Brian Smith - [3] Smeerenburg - [1] Sneglebuss - [1] Svalbard - [1] Tanya Brown - [2] Thomas Knebelsberger - [6] UM/BIO - [1] UM/BIO stations - [1] Unis 2009 - [1]
Specimen Identification:
Arlie H Mccarthy - [1] Chris Fletcher - [3] Endre Willassen - [1] Grethe S Haugen - [1] Hans Hillewaert - [1] Hermann Neumann - [11] Kara K. S. Layton - [7] Kennet G Lundin - [1] Nathalie Skahjem - [1] Renee Miskie - [1] Student - [1] Tanya M. Brown - [2] Tom Alvestad - [2]