The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
Anais Krystel Renaud BIODIVERSITY OF THE MUSCIDAE (DIPTERA) FROM CHURCHILL, MANITOBA, CANADA, WITH TAXONOMIC ISSUES REVEALED OR RESOLVED BY DNA BARCODING Thesis 2011-12-01
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Erena Dupont, Thierry Backeljau, Marc de Meyer and Stijn Desmyter Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France ZooKeys 2013-12-30;365:307-328 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Vassileva, L.V., Lozanova, L., Marinov, M.P., Morinière, J., Neov, B., Nikolov, B.P., Simov, N., Klayn, S. Prey availability and diet composition of the Grey plover (Pluvialis squatarola) during migration on the South-Western Black Sea coast, Bulgaria Food Webs 2024-12-01;41(1):e00373 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [379]
United States - [90]
Germany - [45]
Finland - [5]
Portugal - [3]
Belgium - [5]
Norway - [5]
Bulgaria - [7]
Netherlands - [6]
United Kingdom - [17]
France - [2]
Belarus - [7]
Romania - [1]
Israel - [1]
China - [2]
Italy - [2]
Sweden - [2]
Austria - [19]
Russia - [2]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Charles S Walker - [17] Marten Klinth - [1] Anais Renaud - [13] CBG Project Management Team - [367] Tim Whittier - [6] Alex Smith - [5] Jere Kahanpaa - [4] Ana C.O. Farinha - [1] Gontran Sonet - [5] Stefan Schmidt - [12] Bjoern Rulik - [10] Manoj K Rathnayake - [16] Torbjorn Ekrem - [2] Matt Bowser - [1] Liliana V. Vassileva - [1] Beverly Mcclenaghan - [4] CBG Collections Unit - [29] Steffen Roth - [1] Sonia AF Ferreira - [1] Mat Seidensticker - [5] Jade Savage - [3] Jenna L Braun - [2]
Oscar Vorst - [6] Stefan Schmidt - [2] Bjoern Rulik - [24] Evgeny V. Zakharov - [1] CBG Collections Unit - [48] Thor H Ringsby - [1] Anna Maria Solecki - [1] Paul D.N. Hebert - [1] Lyndall Pereira da Conceicoa - [16] Charles S Walker - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
USDIQ1253-09 {Muscina levida}
License:
CreativeCommons Attribution (2009)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Bulgarian Academy of Sciences, Institute of Biodiversity and Ecosystem Research - [1]
Centre for Biodiversity Genomics - [461]
Finnish Museum of Natural History, Zoological Museum - [4]
Kenai National Wildlife Refuge - [1]
McGill University, Lyman Entomological Museum - [1]
Memorial University of Newfoundland - [16]
Mined from GenBank, NCBI - [17]
NTNU University Museum, Department of Natural History - [2]
National Institute of Criminalistics and Criminology, Belgium - [5]
Naturalis Biodiversity Center - [6]
Personal Collection of Jenna L Braun - [2]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [3]
SNSB, Zoologische Staatssammlung Muenchen - [14]
Station Linne - [1]
Universidade de Lisboa, Faculdade de Ciencias - [1]
University of Bergen, Natural History Collections - [1]
University of Manitoba, Wallis Roughley Museum of Entomology - [2]
Wellcome Sanger Institute - [16]
Widener University - [2]
Zoologisches Forschungsmuseum Alexander Koenig - [34]
Sequencing Centers:
Beijing Genomics Institute - [24] Centre for Biodiversity Genomics - [434] Naturalis Biodiversity Center - [6] Royal Belgian Institute of Natural Sciences - [5] SNSB, Zoologische Staatssammlung Muenchen - [3]
Photography:
CBG Photography Group - [11] CBG Robotic Imager - [5] CBG Robotic Rig - [58] I. Sandunika - [3] Jaclyn McCormick - [13] Jay Cosey - [1] Jay Cossey - [2] Jenna Braun - [5] Jenni Moilanen - [2] Jerome Moriniere - [1] Jinjing Wang - [2] K. Rathnayake - [1] Kate Goodrich - [2] Kellyn Hawley - [1] Kristen Mancuso - [3] L. Dawson - [3] Matt Bowser - [1] Naturalis DNA barcoding facility - [6] Piia Partanen - [2] Rick Turner - [2] Sanger BIOSCAN Team - [12] Spencer Walker - [9] St. Roth - [1] T. Rahal - [9] Tim Whittier - [1] Veronique Bellavance - [1]
Collectors:
A. - [1] A. Baker - [3] A. C. Pont - [1] A. Nakano - [1] A. Renaud - [5] A.Baetz - [4] A.Borisenko - [1] A.C.Pont - [1] A.Renaud - [4] Abida Nasreen - [1] Abigail Bailey - [1] Aija White - [4] Alex Smith - [5] Alina Mcmillan - [1] Amanda Peers - [1] Amy Fennell - [1] Ana C. O. Farinha - [1] Andrea Watson - [2] Anne Parkhill - [2] Antti Haarto - [3] Austin; Laine - [1] B. A. Bennett - [1] B. Maples - [3] B. McClenaghan - [4] B. Naday - [4] BIO Collections Staff - [17] BIO Team - [2] BIOBus 2012 - [44] BIObus 2009 - [1] BIObus 2013 - [14] BIObus 2014 - [4] Baker - [1] Baker Ellyn - [1] Barb Johnston - [2] Barb Maschke - [1] Becky Yeo - [2] Belleuvre Nina - [2] Benjamin - [3] Benjamin Maples - [1] Benoit Godin - [5] Bernard Martin - [1] Brenda Csordas - [6] Brett Sarchuk - [2] Bruce A. Bennett - [5] C.Sheffield - [2] C.Sobel - [1] C.Vandermeer - [1] CDFW - [4] Cameron Morrison - [1] Carla Palangio - [8] Catherine Wassmansdorf - [1] Cathy Hawes - [1] Cavan Harpur - [3] Charmayne Rumbolt - [1] Chris Alpaugh - [1] Chris Roth - [1] Christine Carriere-Roth - [1] Christine Tipou - [1] Chrystal Simon - [4] Claire Carvell - [3] Colin Veevers - [1] Coreen Putman - [3] D. - [8] D. & Segerer - [1] D.Faser - [5] D.Iles - [2] Danielle Gauci - [2] David Derewianko - [2] David Hemprich-Bennett - [1] Deborah Beaumont - [1] Denny Gael - [1] Doczkal - [9] Donna MacLeod - [2] E. Stur - [2] E.H. Lowell - [1] Ellie - [1] Ellie Grove - [3] Emily Noel - [1] Emma Whiting - [1] Erica De Serranno - [1] Erin McMillan - [2] Etai Kahana - [1] Ethel Aberg - [1] Eva; Deer - [1] F.Tremblay - [1] G. Sellmayer - [2] GBOL-Team ZFMK - [24] Gaia Banelyte - [1] Gergin Blagoev - [1] Gershenz - [1] Giar-Ann - [1] Gill Banks - [1] Grace Mchaina - [1] Grant Peregoodoff - [3] GregMeredith - [1] H.Kloeppel - [5] Hans Huijbregts - [2] Heidi Brown - [19] Heidi Paterson - [1] Horna Lowell - [1] I. Iliev - [3] J Wang - [1] J. - [7] J. Cossey - [1] J. Laine - [1] J. Mailoux - [1] J.Baxter - [2] J.Brewster - [5] J.Cossey - [8] J.Foster - [2] J.McCormick - [8] J.Sones - [8] James Sones - [3] Jen - [3] Jenna McQuire - [2] Jere Kahanpaeae - [1] Jeremy deWaard - [1] Jesse; Tang - [1] JoEllen Jensen - [1] John Pollock - [1] John Winfield - [1] Jones Laura - [1] Joop Prijs - [4] Juhasziova Sona - [1] Julia Wild - [2] K. Perez - [1] K. Rathnayake - [16] K.Greenham - [7] K.Huerta - [4] KR Goodrich - [2] Karen Larter - [1] Kelli Neaven - [1] Kerry Brown - [2] Kevin Klassen - [1] Korneyev - [3] Kris Hart - [1] Kristina J. Anderson - [40] Kung - [1] L. & V. Penevi - [3] L. Grevstad - [4] L. Janke - [2] L. Ramsay - [5] L.Attard - [7] LACM - [3] Labo MIC - [5] Laura Jones - [1] Leila T. Franzen - [1] Leslie - [1] Liam Crowley - [1] Liliana V. Vassileva - [1] Lira Valencia - [1] Lisa Cairncross - [2] Lowe Abigail - [1] Lucy Baker - [1] M. Oprandi - [4] M.Coghill - [1] M.Otway - [1] M.Winterowd - [4] Maija Sujala - [1] Maples - [1] Mark MeLean - [1] Mat Seidensticker - [5] Matt Bishop - [1] Matt Bowser - [1] Megan Scott - [1] Michael Cottrill - [2] Michael McGinnis - [5] Michael Svoboda - [2] Michelle Gibbs - [1] N. Tang - [2] NBP Field Party - [1] NHMLAC - [2] Nadine Mitschunas - [3] Natalie De Ruysscher - [3] Nathan - [1] Neryse Mably - [1] Norman - [1] O.Ermakov - [2] P. Oboyski - [1] PROBE - [1] Parks Canada Agency - [2] Paul Harris - [1] Paul Hebert - [11] Penelope Whitehorn - [2] Pete - [1] Peter Tarleton - [3] Pinette - [1] Podhorna J. et al. - [1] Prabir Roy - [3] R. Allingham - [1] R. Popko - [2] Randi Mulder - [2] Remy Wood - [1] Rianna Badesha - [1] Rikmyrprosjektet - [1] Rui Andrade - [1] Rulik et al - [10] Russell Thomas - [1] Ryan Moulton - [1] S. & Voith - [7] S. Behrens - [2] S. Cannings - [6] S. Korneyev - [3] S.Carriere - [1] S.Chisholm - [1] S.Gerrow - [1] S.McCubbin - [1] Sandy Pond - [8] Sarah Lenehan - [2] Saul-Gershenz - [1] Savanna - [1] Schmidt - [7] Scott Cates - [1] Sejal - [1] Severyn - [1] Severyn Korneyev - [1] Severyn; Maples - [2] Sheldon Hiebert - [1] Stan Tiffin - [5] Stephanie Car - [1] Stephanie Church - [3] Stuart Warrington - [2] Suzanne Glasgow - [1] T Whittier - [1] T. Ekrem - [2] T.Davison - [5] T.F.Mitterboeck - [1] T.H. Ringsby and B.-E. Saether - [1] Tatsiana Lipinksaya - [7] Teresa Tagarelli - [1] Thomas Zechmeister - [19] Tim Brown - [1] Tomislav Terzin - [6] V.Junea - [1] V.Leveille - [2] V.Vekhnik - [2] Yvonne Bendo - [1] Zach Turner - [11]
Specimen Identification:
Adrian Pont - [2] Aija F White - [4] Ana C.O. Farinha - [1] Anais Renaud - [12] Antti Haarto - [3] BOLD ID Engine - [32] BOLD Identification System [2015] - [10] BOLD Identification System [2016] - [2] BOLD Identification System [2018] - [14] BOLD Identification System [2019] - [11] BOLD Identification System [2020] - [6] BOLD Identification System [] - [104] BOLD Machine Learning Tool Kit - [1] Dieter Doczkal - [6] H. Fremdt - [6] Hans Huijbregts - [2] Hans-Georg Rudzinski - [17] Jade Savage - [3] Jere Kahanpaa - [1] Jerome Moriniere - [4] Jinjing Wang - [1] Joop Prijs - [4] Juergen Kappert - [1] Marten Klinth - [1] Matt Bowser - [1] Paul D.N. Hebert - [197] Renee Miskie - [18] Rui Andrade - [1] Valerie Levesque-Beaudin - [26] Wolfgang Adaschkiewitz - [15] Yves Braet - [5]