The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [39]
Italy - [14]
Norway - [6]
United Kingdom - [2]
Germany - [33]
Finland - [12]
Aland - [2]
United States - [33]
Netherlands - [4]
Croatia - [2]
France - [18]
Austria - [22]
Liechtenstein - [1]
Greece - [3]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [71] Thibaud Decaens - [1] Axel Hausmann - [1] Wolfgang Stark - [2] Arild Johnsen - [6] Andreas Segerer - [25] Peter Huemer - [24] Marko Mutanen - [7] Barcoding Naturalis - [3] CBG Project Management Team - [3] CBG Collections Unit - [2] Matthias Nuss - [3] Nikolaus U Szucsich - [1] Carlos Lopez-Vaamonde - [1] Peter Buchner - [1] Charles S Walker - [1] Vazrick Nazari - [3] Daniel Handfield - [1]
Ben W Price - [1] Jukka Tabell - [2] Jean-Francois Landry - [7] Pierre henri Fabre - [1] Peter Huemer - [7] Marko Mutanen - [2] Bjoern Rulik - [1] Carlos Lopez-Vaamonde - [12] Charles S Walker - [1] Peter Buchner - [1] Andreas Segerer - [1] Rodolphe Rougerie - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [63]
Centre for Biodiversity Genomics - [5]
Institut de Recherche sur la Biologie de l'Insecte - [1]
Landesmuseum Kaernten - [10]
Mined from GenBank, NCBI - [2]
Museum national d'Histoire naturelle - [1]
Natural History Museum, London - [2]
Naturalis Biodiversity Center - [3]
Private Research Collection Tim Green - [1]
Research Collection Peter Buchner - [1]
Research Collection of A. Mayr - [1]
Research Collection of Alain Charpantier - [1]
Research Collection of Alfred Haslberger - [6]
Research Collection of Andreas Stuebner - [3]
Research Collection of Carlos Lopez-Vaamonde - [11]
Research Collection of Daniel Handfield - [1]
Research Collection of David Holden - [1]
Research Collection of F. Graf - [1]
Research Collection of Gerard Labonne - [2]
Research Collection of Jukka Tabell - [3]
Research Collection of Kari Vaalamo - [2]
Research Collection of Konrad Loos - [1]
Research Collection of Peter Buchner - [3]
Research Collection of Peter Lichtmannecker - [2]
Research Collection of Richard Heindel - [2]
Research Collection of Theo Gruenewald - [2]
Research Collection of Thomas Guggemoos - [2]
Research Collection of Wolfgang Stark - [2]
Senckenberg Natural History Collections Dresden, Museum of Zoology - [1]
Smithsonian Institution - [1]
Smithsonian Institution, National Museum of Natural History - [4]
Tiroler Landesmuseum Ferdinandeum - [16]
University of Connecticut - [2]
University of Oslo, Natural History Museum - [6]
University of Oulu - [10]
University of Oulu, Zoological Museum - [4]
inatura, Dornbirn - [2]
Sequencing Centers:
Centre for Biodiversity Genomics - [162] Naturalis Biodiversity Center - [3] Unknown - [1]
Photography:
A. Haslberger - [1] Alfred Haslberger - [1] Andreas K. Stuebner - [1] Annabelle Tiret - [3] Buchner - [1] CBG Photography Group - [1] Carlos Lopez Vaamonde - [3] Christian Wieser - [2] DNA barcoding facility - [2] Elisabeth Frank - [1] Erkka Laine - [2] Fabre Pierre-Henri - [1] Gérard Labonne - [1] G. Rotheneder - [2] Hymenoptera Photo Group - [1] Jaclyn McCormick - [6] Jay Cossey - [1] Jean-Francois Landry - [14] Jukka Tabell - [3] Jules Dessart-Pardon - [1] Kai Berggren - [2] Laura Waldner - [4] Lisa Bartels - [34] Louison Cama - [4] MTD Lepidoptera Section - [2] Marko Mutanen - [4] Megan Swan - [2] Mira Niemelä - [2] Naturalis DNA barcoding facility - [1] Peter Buchner - [2] Peter Huemer - [1] Tiara Yasmeen Hensel - [1] Tim Green - [1] Vazrick Nazari - [24] Wiesmair - [1] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [6] kberggr@online.no - [3] remi rougerie/clara roclin - [1]
Collectors:
A. Haslberger - [2] A. Pucat - [1] A. Stuebner - [3] A.S. Hunt - [13] Aaron S. Hunt - [3] Alain Charpentier - [3] Alfred Haslberger - [4] B Landry - [2] B Wright - [1] B. Simmonds - [2] BIObus 2014 - [1] Barry Wright - [4] Benjamin; Schattanek-Wiesmair - [1] Bo Wikstroem - [2] Buchner - [3] Buchner P. - [1] C. Cabella - [1] C. Doorenweerd & W. Moerland - [1] Carlos Lopez Vaamonde - [7] Carlos Lopez Vaamonde & Thomas Huet - [2] Carlos Lopez-Vaamonde - [3] Ch. - [10] D Holden - [3] D.Handfield - [1] D.L Wagner - [2] DC Ferguson - [1] DL Wagner - [3] Deutsch H. - [1] Doorenweerd - [2] Dr. Andreas H. Segerer - [10] Dr. Theo Gruenewald - [2] E Jackh - [4] E. Jaeckh - [1] F Scott - [1] F.I.S. - [1] Forest Insect Survey - [1] Freeman & Lewis - [1] G. Labonne - [2] GBOL-Team SNSD - [1] George Fritz - [1] Graf F. - [1] Huemer P. - [16] Hugo van der Wolf - [1] J. McDunnough - [1] JD Lafontaine - [2] JF & B Landry - [1] JF Lafontaine - [1] JF Landry - [2] JR Grehan - [1] Jean-Francois Landry - [2] Juhani Itaemies - [3] Jukka Tabell - [2] K. Mandery - [1] Kai Berggren - [4] Kari Vaalamo - [2] Konrad Loos - [1] L Mavin & M Young - [2] Leif Aarvik - [1] M Pratte - [2] M. Roberts - [6] Marko Mutanen - [9] Mayr A. - [1] Monica Trondhjem - [1] N.D.F. Grindley - [2] Nestori Mutanen - [2] Olivier Delzons - [1] Panu Vaelimaeki - [3] Patrick Mrazek - [1] Peder Skou - [1] Peter Lichtmannecker - [2] Petra - [1] Reidar Voith - [1] Richard Heindel - [2] Rudi Tannert - [1] S.Chisholm - [1] Schattanek-Wiesmair - [1] Thomas Guggemoos - [2] Tim Green - [1] V. Lepisto - [2] Wieser - [10] lgt. W.Stark - [2]
Specimen Identification:
Alain Charpentier - [1] Alfred Haslberger - [2] Andreas Segerer - [19] Andreas Stuebner - [1] BOLD Identification System [] - [2] Barry Wright - [1] Camiel Doorenweerd - [3] Carlos Lopez-Vaamonde - [11] Christian Wieser - [10] F. Graf - [1] Gerard Labonne - [2] H. Deutsch - [1] Jean-Francois Landry - [64] Jukka Tabell - [3] Kai Berggren - [5] Kari Vaalamo - [2] Klaus Mandery - [1] Leif Aarvik - [1] Marko Mutanen - [13] Mayr A. - [1] Paul D.N. Hebert - [1] Peter Buchner - [3] Peter Huemer - [17] Richard Heindel - [2] Tiara YASMEEN Hensel - [1] Tim W V Green - [1] Vazrick Nazari - [1] Wolfgang Stark - [2]