The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
THOMAS KNEBELSBERGER, MONICA LANDI, HERMANN NEUMANN,
MATTHIAS KLOPPMANN, ANNE F. SELL, PATRICK D. CAMPBELL, SILKE LAAKMANN,
MICHAEL J. RAUPACH, GARY R. CARVALHO and FILIPE O. COSTA A reliable DNA barcode reference library for the identification of the North European shelf fish fauna Molecular Ecology Resources 2014-03-12;14(5):1060-1071 (PDF)
Günther, Babett; Michael J. Raupach; Thomas Knebelsberger Full-length and mini-length DNA barcoding for the identification of seafood commercially traded in Germany Food Control 2016-10-16;73(Part B):922–929 (PDF)
Plough, Louis, V., Ogburn, Matthew Bryan, Fitzgerald, Catherine L., Geranio, Rose, Marafino, Gabriella A. and Richie, Kimberly D. Environmental DNA analysis of river herring in Chesapeake Bay: A powerful tool for monitoring threatened keystone species Plos One 2018-11-01;13(11):1-25 (PDF)
M. R. McCusker, D. Denti, L. Van Guelpen, E. Kenchington and P. Bentzen Barcoding Atlantic Canada's commonly encountered marine fishes Molecular Ecology Resources 2012-12-17;13(2):177-188 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [9]
United Kingdom - [11]
Atlantic Ocean - [15]
United States - [21]
Norway - [7]
North Sea - [16]
Germany - [10]
Greenland - [1]
Sweden - [2]
Netherlands - [1]
DATA MANAGERS:
Public Data:
Private Data:
Filipe Costa - [5] Tyler Zemlak - [5] Charles S Walker - [121] Sharon A. Appleyard - [5] Babett Guenther - [5] Arild Johnsen - [4] Thomas Knebelsberger - [9] Dirk Steinke - [3] Amy C. Driskell - [2] Jan Y Poulsen - [1] Student Portal Manager - [1] Alejandro L de Carlos - [3] Paul Bentzen - [12]
Joel Llopiz - [8] Sofie Derycke - [4] Amy C. Driskell - [10] Kevin K. Beentjes - [1] Donna Cawthorn - [3]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [14]
Flanders Research Institute for Agriculture, Fisheries and Food - [4]
Instituto Espanol de Oceanografia, Cadiz - [1]
Mined from GenBank, NCBI - [121]
Naturalis Biodiversity Center - [1]
No Voucher Tissue - [6]
Smithsonian Institution - [5]
Smithsonian Institution, National Museum of Natural History - [6]
Stellenbosch University - [3]
Universidade de Santiago de Compostela, Museo de Historia Natural Luis Iglesias - [2]
University of Bergen, Natural History Collections - [4]
University of New England - [1]
University of Oslo, Natural History Museum - [4]
Woods Hole Oceanographic Institution - [8]
Sequencing Centers:
Centre for Biodiversity Genomics - [47] Flanders Research Institute for Agriculture, Fisheries and Food - [4] Generic Commercial Labs - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [6] Universidade de Vigo - [1] University of Vigo - [2]
Photography:
CBG Photography Group - [3] Deborah Landry - [1] Francisco Baldó - [1] Hans Hillewaert - [4] I. Byrkjedal - [3] Rafael Bañón - [2] Thomas Knebelsberger - [9]
Collectors:
Babett Guenther - [5] Bill Brodie - [4] C. Bourbonnais-Boyce - [2] Deborah Landry - [1] Diane Archambault - [1] Donna Cawthorn - [3] Fish & Chips Consortium - [5] Francisco Baldo - [1] G Yearsley (CSIRO) - [5] Hans Hillewaert - [4] Hermann Neumann - [9] Jan Y. Poulsen - [1] Lei Harris - [1] M - [1] Margaret Treble - [1] Niklas Tysklind - [5] Noren - [1] Northeast Fisheries Science Center - [5] Peter van Bragt - [1] Rafael Banon - [2] Sephen Clifford - [2] Terje Laskemoen - [4] Tom Hurlbut - [1] VIMS Trawl Survey - [6] commercial catch - [6]
Specimen Identification:
Babett Guenther - [5] Bruce B. Collette - [5] Francisco Baldo - [1] Hans Hillewaert - [4] Ingvar Byrkjedal - [3] Jan Y Poulsen - [1] Joel Llopiz - [8] Lou Van Guelpen - [3] Olav Oftedal - [6] Peter Van Bragt - [1] Rafael Banon - [2] Robert Aguilar - [6] Student - [1] Terje Laskemoen - [3] Thomas Knebelsberger - [9]