The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert, Jeremy R. deWaard, Evgeny V. Zakharov, Sean W. J. Prosser, Jayme E. Sones, Jaclyn T. A. McKeown, Beth Mantle and John La Salle A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection PLoS ONE 2013-05-27;8(7):e68535 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [19]
United Kingdom - [15]
United States - [28]
Australia - [5]
Finland - [4]
Chile - [4]
Netherlands - [1]
Germany - [4]
Norway - [36]
Austria - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [6] Paul D.N. Hebert - [13] CBG Project Management Team - [29] Marko Mutanen - [4] Jim M. Moore - [2] Axel Hausmann - [1] Barcoding Naturalis - [1] Andreas Segerer - [4] Steffen Roth - [2] Torbjorn Ekrem - [1] Scott E. Miller - [3] Peter Huemer - [1] Charles S Walker - [1] Arild Johnsen - [1] Philip GK Hoffman - [1] Matthew P Besley - [3]
Matthew P Besley - [3] Thor H Ringsby - [32] Doo-sang Park - [1] CBG Collections Unit - [2] Jonathan B Reil - [6] Lyndall Pereira da Conceicoa - [2]
Animal and Plant Quarantine Agency, Plant Quarantine Technology Center - [1]
Australian National Insect Collection - [3]
Bavarian State Collection of Zoology - [2]
Canadian Forest Service, Northern Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [2]
Centre for Biodiversity Genomics - [67]
Mined from GenBank, NCBI - [1]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [14]
Naturalis Biodiversity Center - [1]
Research Collection of David Holden - [4]
Research Collection of Peter Lichtmannecker - [1]
Research Collection of Richard Heindel - [1]
Research Collection of Thomas Guggemoos - [1]
Research Collection of Toni Mayr - [1]
Smithsonian Institution, National Museum of Natural History - [3]
University Museum of Bergen, Natural History Collections - [2]
University of Hawaii at Manoa - [6]
University of Oslo, Natural History Museum - [1]
University of Oulu - [2]
University of Oulu, Zoological Museum - [2]
Wellcome Sanger Institute - [2]
Sequencing Centers:
Animal and Plant Quarantine Agency, Plant Quarantine Technology Center - [1] Centre for Biodiversity Genomics - [63] Natural History Museum, London - [1] Naturalis Biodiversity Center - [1]
Photography:
Aina Maerk Aspaas - [1] CBG Photography Group - [3] CBG Robotic Imager - [21] CBG Robotic Rig - [3] DNA barcoding facility - [1] Gary McDonald - [8] Jaclyn McCormick - [18] Jay Cossey - [3] Jean-Francois Landry - [6] Jim Moore - [2] Libby Avis - [1] Marko Mutanen - [2] Piia Partanen - [2] Richard Wilson - [6] Sanger BIOSCAN Team - [2] Steffen Roth - [2] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [1] kberggr@online.no - [1]
Collectors:
BR; DR - [1] BR; KA - [5] Benjamin Price - [1] Bergen Insektklubb - [2] Bob Ward - [1] Carl Fredrik - [1] D Holden - [4] D.Faser - [1] D.W.Langor - [1] Dave G. Holden - [1] Doorenweerd - [1] Dr David C. Lees - [2] Dr Gavin R. Broad - [1] E. Zakharov - [3] Elise Vasquez - [1] F.Lui - [3] G. Kung - [1] GAC 0088 - [1] Gary McDonald - [6] H.Cameron - [1] I.F.B.Common - [1] J. deWaard - [3] JF Landry & L Humble - [2] Jim Moore - [2] Joana P. Cristovao - [1] Kai Berggren - [1] Ken Barrett - [2] L Mavin & M Young - [4] L. Ramsay - [1] Libby Avis - [1] Lisa Frey - [1] Luehr - [1] MSP 20 - [1] Marko Mutanen - [4] Maxwell V.L. Barclay - [1] Mayr A. - [1] P. Hebert - [1] Peter Lichtmannecker - [1] R. Fitzek - [1] R. Hinsberger - [1] RAB 503 - [1] RG Strong - [3] Richard Heindel - [1] Richard Wilson - [7] Richard Zuk - [1] Robin Barfoot - [1] S. deWaard - [3] S.Beavan - [1] S.P.Kim - [1] SMP 36 - [1] SPC 13 - [1] Stuart Warrington - [1] T.H. Ringsby and B.-E. Saether - [32] Thomas Guggemoos - [1]
Specimen Identification:
Andreas Segerer - [3] BOLD ID Engine - [1] BOLD Identification System [2018] - [3] BOLD Identification System [2019] - [1] BOLD Identification System [2023] - [1] BOLD Identification System [] - [6] Bong Kyu Byun - [1] Camiel Doorenweerd - [1] David C. Lees - [1] Dr David C. Lees - [1] Gary McDonald - [4] Gavin R. Broad - [2] Gregory R. Pohl - [1] Jean-Francois Landry - [6] Jim M. Moore - [1] Jonathan B Reil - [6] Kai Berggren - [2] Libby Avis - [1] Marko Mutanen - [4] Maxwell V.L. Barclay - [2] Paul D.N. Hebert - [2] Peter Huemer - [1] R. W. Hodges - [3] Renee Miskie - [32] Richard Heindel - [1] Richard L. Wilson - [4] Steffen Roth - [2]