The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Leah A. Lewis, David E. Richardson, Evgeny V. Zakharov, Robert Hanner Integrating DNA Barcoding of Fish Eggs into Ichthyoplankton Monitoring Programs Fishery Bulletin 2016-02-05;114(2):153-165
M. R. McCusker, D. Denti, L. Van Guelpen, E. Kenchington and P. Bentzen Barcoding Atlantic Canada's commonly encountered marine fishes Molecular Ecology Resources 2012-12-17;13(2):177-188 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [6]
United States - [58]
Atlantic Ocean - [57]
DATA MANAGERS:
Public Data:
Private Data:
Nataly Ivanova - [75] Paul Bentzen - [6] Tyler Zemlak - [7] Andrew C. Bentley - [1] Charles S Walker - [3] Student Portal Manager - [1]
Sarah Weisberg - [32] Amy C. Driskell - [3]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
SCFAC450-06 {Scophthalmus aquosus}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Northeast Fisheries Science Center, Narragansett Laboratory - [25]
Research Collection of Bruce Collette - [2]
Smithsonian Institution - [5]
Smithsonian Institution, National Museum of Natural History - [3]
Stony Brook University - [32]
University of Kansas, Biodiversity Research Center - [1]
University of New England - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [121] Generic Commercial Labs - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [3]
Photography:
CBG Photography Group - [7] David E. Richardson - [2] Deborah Landry - [1] Leah Lewis - [66]
Collectors:
David Richardson - [9] Kate A - [1] Lars Hammer - [1] MA - [1] MADMF - [2] Moots - [1] Northeast FISHeries Science Center (NEFSC) - [1] Robert Aguilar - [1] Tom Hurlbut - [2] VIMS Trawl Survey - [2] Woods Hole - [1]
Specimen Identification:
BOLD ID Engine - [23] Bruce B. Collette - [5] David E. Richardson - [9] Lou Van Guelpen - [2] Robert Aguilar - [3] Student - [1]