The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [17]
United Kingdom - [4]
Germany - [4]
Finland - [4]
United States - [9]
Switzerland - [1]
Austria - [4]
Norway - [6]
Russia - [2]
France - [3]
Netherlands - [1]
Croatia - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [13] Jean-Francois Landry - [4] Jeremy deWaard - [5] Paul D.N. Hebert - [3] Andreas Segerer - [4] Marko Mutanen - [4] Peter Buchner - [6] Chris Looney - [1] Torbjorn Ekrem - [5] Arild Johnsen - [2] Scott E. Miller - [3] Wolfgang Stark - [1] Matthew P Besley - [1]
Carlos Lopez-Vaamonde - [2] Mat Seidensticker - [1] CBG Collections Unit - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [4]
Centre for Biodiversity Genomics - [14]
Museum fuer Naturkunde - Leibniz-Institut fuer Evolutions- und Biodiversitaetsforschung - [1]
NTNU University Museum, Department of Natural History - [5]
Natural History Museum, London - [4]
Research Collection of Alain Cama - [2]
Research Collection of Daniel Handfield - [3]
Research Collection of Hartmut Wegner - [1]
Research Collection of Jeremy deWaard - [2]
Research Collection of Kai Berggren - [1]
Research Collection of Peter Buchner - [2]
Research Collection of Peter Sonderegger - [1]
Research Collection of Theo Gruenewald - [2]
Research Collection of Wolfgang Stark - [1]
SNSB, Zoologische Staatssammlung Muenchen - [1]
Smithsonian Institution, National Museum of Natural History - [3]
Tiroler Landesmuseum Ferdinandeum - [2]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [4]
Washington State Department of Agriculture - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [49] Natural History Museum, London - [1]
Photography:
Aina Maerk Aspaas - [2] CBG Photography Group - [12] CBG Robotic Rig - [1] Carlos Lopez Vaamonde - [2] G. Rotheneder - [1] Jaclyn McCormick - [4] Jay Cossey - [1] Jean-Francois Landry - [4] Jeremy deWaard - [2] Kai Berggren - [2] Lauren Van Patter - [2] Mat Seidensticker - [2] Peter Buchner - [3] Richard Wilson - [5] ZSM Photography Team - [3]
Collectors:
A. CAMA - [2] Buchner P. - [1] C. S. Guppy - [4] C.Doets - [1] Carl Fredrik - [2] Daniel Handfield - [3] Doerries F. - [1] Dr Gavin R. Broad - [1] Dr. Andreas H. Segerer - [1] Dr. Theo Gruenewald - [2] E. Stur - [3] E.Jackh - [1] Erin George-Samuel - [1] Erlebach S. - [1] Glenn Fine - [1] H.L. Parker - [1] Hartmut Wegner - [1] Huemer P. - [1] J.F. Landry - [1] J.R. - [2] Jean-Francois Landry - [1] John Owen - [1] Kai Berggren & Leif Aarvik - [1] L. Scott - [1] Laura Sivess - [1] Libby Avis - [2] Luehr - [2] Lynn Scott - [1] Marko Mutanen - [4] Mat Seidensticker - [1] Panu Vaelimaeki - [3] Patrik HERTZOG - [1] Reidar Voith - [1] Richard Wilson - [5] SMP 101 - [1] Sarah Lenehan - [1] Sonderegger P. - [1] Srnka L. - [1] Steph West - [1] T. Ekrem - [3] deWaard - [2] lgt. W.Stark - [1]
Specimen Identification:
Andreas Segerer - [4] BOLD ID Engine - [1] BOLD Machine Learning Tool Kit - [1] Cama Alain - [2] Daniel Handfield - [3] Eric H Lagasa - [1] Gavin R. Broad - [1] Jean-Francois Landry - [1] Kai Berggren - [4] Libby Avis - [2] Marko Mutanen - [4] Mikko Pentinsaari - [4] Peter Buchner - [2] Peter Huemer - [1] Peter Sonderegger - [1] Richard L. Wilson - [3] S. Erlebach - [1] USNM Curators - [1] Wolfgang Stark - [1]