The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Van Nieukerken, Erik J.; Doorenweerd, Camiel; Ellis, Willem N.; Huisman, K. J.; Koster, J. C.; Mey, Wolfram; Muus, Tymo S T; Schreurs, Arnold Bucculatrix ainsliella Murtfeldt, a new North American invader already common on red oaks (Quercus rubra) in Western Europe (Bucculatricidae) Nota Lepidopterologica 2012-11-15;35(2):135-159 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones and Evgeny V. Zakharov A Sequel to Sanger: amplicon sequencing that scales BMC Genomics 2018-03-27;19(219):0-0
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [45]
United States - [43]
Netherlands - [6]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [18] CBG Project Management Team - [27] Jeremy deWaard - [2] Camiel Doorenweerd - [5] Marko Mutanen - [1] Chris Looney - [3] Scott E. Miller - [4] Kenneth H Stead - [2]
CBG Project Management Team - [30] Reza Zahiri - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
MECB686-05 {Bucculatrix ainsliella}
License:
Copyright (2007)
License Holder:
Jean-Francois Landry, Canadian National Collection
Canadian National Collection of Insects, Arachnids and Nematodes - [18]
Centre for Biodiversity Genomics - [57]
Kiel University, Ecology Center - [1]
Naturalis Biodiversity Center - [5]
Research Collection of D. Holden - [2]
Research Collection of Jeremy deWaard - [1]
Royal British Columbia Museum - [1]
Smithsonian Institution, National Museum of Natural History - [4]
Washington State Department of Agriculture - [3]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [52] Naturalis Biodiversity Center - [5]
Photography:
CBG Photography Group - [8] Erik J. van Nieukerken - [14] Jean-Francois Landry - [17] Jeremy deWaard - [2] NCB Naturalis DNA barcoding facility - [2] Vazrick Nazari - [1] Zdenko Tokar - [1]
Collectors:
A. - [2] Alison Forde - [2] BIO Collections Staff - [9] BIObus 2013 - [1] C.S. Eiseman - [1] Chris Johnstone - [2] D Holden - [2] D. Henderson - [6] E.J. van Nieukerken - [3] E.Jackh - [4] Eric LAGASA - [3] Gergin Blagoev - [1] Holden D. - [2] J.F. Landry - [4] Jean-Francois Landry - [4] Jeff Howard - [4] Josh Palumbo - [32] K.Greenham - [1] K.H.Stead - [2] K.J. Huisman - [2] K.J. Huisman & C. Doorenweerd - [3] L.Attard - [1] Li - [2] M Mello - [1] Maxim Larrivee - [1] Paul Kossowski - [1] Tyler Zemlak - [1] Wolfgang Wittland - [1]
Specimen Identification:
BOLD ID Engine - [3] BOLD Identification System [2015] - [1] BOLD Identification System [2018] - [1] BOLD Identification System [2019] - [30] BOLD Identification System [] - [22] E. Jackh - [4] Erik J. van Nieukerken - [3] Jean-Francois Landry - [8] Reza Zahiri - [2] Wolfram Mey - [2] Zdenko Tokar - [1]