The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [26]
Serbia - [1]
United Kingdom - [9]
Germany - [10]
Finland - [5]
Spain - [2]
Italy - [10]
France - [4]
United States - [6]
Austria - [10]
Norway - [3]
Portugal - [3]
Greece - [1]
Pakistan - [1]
Kyrgyzstan - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Collections Unit - [1] CBG Project Management Team - [19] Evgeny V. Zakharov - [1] Jeremy deWaard - [6] Mehrdad Hajibabaei - [1] Paul D.N. Hebert - [8] Axel Hausmann - [13] Marko Mutanen - [4] Antonio S. Ortiz - [2] Peter Huemer - [11] Rodolphe Rougerie - [3] James B. Sullivan - [3] Juha Salokannel - [1] Arild Johnsen - [2] Wolfgang Stark - [2] Charles S Walker - [2] Mat Seidensticker - [1] Stefano Scalercio - [2] Sonia AF Ferreira - [3] Sean W. Prosser - [1]
May Bente Brurberg - [1] Mat Seidensticker - [1] Peter Huemer - [2] Stefano Scalercio - [1] Carlos Lopez-Vaamonde - [1] Brigitte Gottsberger - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LNAUU943-15 {Amphipyra tragopoginis}
License:
CreativeCommons Attribution (2015)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [1]
Centre for Biodiversity Genomics - [20]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [3]
Landesmuseum Kaernten - [2]
MPG Ranch - [2]
Mined from GenBank, NCBI - [3]
Museum national d'Histoire naturelle - [1]
Natural History Museum, London - [8]
Naturmuseum Suedtirol - [1]
Norwegian Institute for Agricultural and Environmental Research - [1]
Research Center in Biodiversity and Genetic Resources - [3]
Research Collection of Alfred Haslberger - [3]
Research Collection of Bernard Dardenne - [2]
Research Collection of Carlos Lopez Vaamonde - [1]
Research Collection of Daniel Handfield - [1]
Research Collection of Dejan Stojanovic - [1]
Research Collection of J. B. Sullivan - [4]
Research Collection of Jaakko Kullberg - [1]
Research Collection of Jeremy deWaard - [1]
Research Collection of Wolfgang Stark - [2]
Royal British Columbia Museum - [1]
SNSB, Zoologische Staatssammlung Muenchen - [10]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [9]
Universidad de Murcia, Research Collection Biologia Animal - [2]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [1]
University of Oslo, Natural History Museum - [2]
University of Oulu, Zoological Museum - [4]
University of Vienna, Dept of Botany and Biodiversity Research - [1]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [77] GATC Biotech AG - [1] University of Vienna, Dept of Botany and Biodiversity Research - [1]
Photography:
CBG Photography Group - [11] CBG Robotic Rig - [1] Christian Wieser - [1] Dr. Antonio S. Ortiz - [2] Even Sannes Riiser - [1] G. Rotheneder - [2] Giuseppe Rijllo - [1] J.Gill - [1] Jaclyn McCormick - [9] James Sullivan - [3] Jay Cossey - [2] Jeremy deWaard - [4] Juha Salokannel - [1] Kai Berggren - [2] Kerstin Wehinger - [1] Lepidoptera photo group - [1] Libby Avis - [6] Louison Cama - [1] M. Seidensticker - [1] Mat Seidensticker - [1] Megan Swan - [1] Mikko Pentinsaari - [1] Rick Turner - [1] Rodolphe Rougerie - [3] Stefano Scalercio - [2] ZSM Photography Team - [5] photo work group Dr. Axel Hausmann - [1]
Collectors:
A. Haslberger - [3] A. Hausmann - [3] Ana Rita Goncalves - [2] Arno Kullberg - [1] Aud I. - [4] BIO Collections Staff - [1] Bernard Dardenne - [2] Buchner P. - [1] CP 2299 - [1] CP 2299a - [1] Carlos Lopez Vaamonde - [1] Carrie Voss - [1] Ch. - [2] Chrystal Simon - [2] D.C.Ferguson - [1] Dan Bock - [1] Daniel Handfield - [1] Dejan V. Stojanovic - [1] Dieter Doczkal - [2] Dr. Ahktar Rasool - [1] Dr. D. Kolligs - [1] F. Theimer - [1] Fischer - [4] Franz R. - [1] G.M.Haggett - [1] GAC 0399 - [1] Goueset V. - [1] Huemer P. - [7] Isabella Sehner - [1] J. Barbut & R. Rougerie - [1] J.B.Sullivan - [4] J.J. Guerrero - [1] J.R. - [4] Jaakko Kullberg - [1] Jarkko Leivo - [1] John Owen - [1] K. Ambil - [1] Kai Berggren - [2] Keil Norbert und Verena - [1] L Mavin & M Young - [2] L.Avis - [5] Libby Avis - [2] M. Garre - [1] M. Scofield - [1] M. Seidensticker - [1] MRY 97 - [1] Marko Mutanen - [3] Martin Corley - [3] Mr. Numan - [1] N. Zahm - [1] Panu Vaelimaeki - [2] Paul Hebert - [3] R.Avis - [5] RAB 252 - [1] Rainer Busse - [1] Rein-Arne Golf - [1] SPC 283 - [1] Scalercio-Infusino-Greco - [2] Sonia Ferreira - [3] Stark W. - [2] Sverre Kobro - [1] Wieser - [2] deWaard - [4]
Specimen Identification:
Antonio S. Ortiz - [2] Axel Hausmann - [12] BOLD Identification System [2023] - [1] BOLD Identification System [] - [1] BOLD Machine Learning Tool Kit - [1] Bernard Dardenne - [2] Carlos Lopez-Vaamonde - [1] Christian Wieser - [2] Daniel Handfield - [1] Dejan V. Stojanovic - [1] Detlef Kolligs - [1] Douglas C. Ferguson - [1] Gergin A. Blagoev - [1] J. Donald Lafontaine - [3] Jaakko Kullberg - [1] James B. Sullivan - [1] Jarkko Leivo - [1] Jerome Barbut - [1] Kai Berggren - [2] Libby Avis - [7] Marko Mutanen - [3] Martin Corley - [3] Mathew Seidensticker - [1] Norbert Keil - [1] Paul D.N. Hebert - [3] Peter Buchner - [1] Peter Huemer - [9] Stefano Scalercio - [2] Sverre Kobro - [1] Wolfgang Stark - [2]