The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
David C. Campbell, Paul D. Johnson, James D. Williams, Andrew K. Rindsberg, Jeanne M. Serb, Kory K. Small and Charles Lydeard Identification of 'extinct' freshwater mussel species using DNA barcoding. Molecular Ecology Resources 2008-07-01;8(4):711-724 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [53]
United States - [869]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [6] Charles S Walker - [761] Robert Aguilar - [5] US EPA - [3] Student Portal Manager - [1] Kristy Deiner - [1]
Andree D. Gendron - [30] Nathan A. Johnson - [213] France Dufresne - [22] Kevin S. McCann - [4]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
PPGB105-12 {Elliptio complanata}
License:
CreativeCommons Attribution (2012)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Environmental Protection Agency, Office of Research and Development, Duluth, MN - [3]
Florida Museum of Natural History - [212]
Mined from GenBank, NCBI - [761]
North Carolina Museum of Natural Sciences - [1]
Smithsonian Institution, National Museum of Natural History - [5]
State University of New York Buffalo State College, Great Lakes Center - [1]
Universite du Quebec a Rimouski - [22]
University of Guelph - [4]
University of New England - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [50] Environmental Protection Agency, Office of Research and Development Cincinnati - [3] Generic Commercial Labs - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [131] US Geological Survey, Southeast Ecological Science Center - [7] USGS Southeast Ecological Science Center (Gainesville) - [29] University of Florida - [62]
Photography:
CBG Photography Group - [7] Isabel Porto-Hannes - [1] Kareina D'Souza; Kara Layton - [3] Nathan A. Johnson - [400] Sam Landry - [1]
Collectors:
A. Crownhart - [3] A. Karatayev - [1] A. Mahar - [1] ACF Workshop - [1] ACF mussel workshop - [5] ACF workshop - [2] Andree Gendron - [30] B. Butler - [2] Bernatis - [3] BioBus 2011 - [3] Bob Butler - [5] C. Bieg - [3] C. Shea - [1] C.Weland - [4] D. Hughes - [1] D. Weiler - [1] Darlene A. Blum - [1] E. Nelson - [5] EPA ORD staff - Duluth - [3] EYC Workshop (JDW 20) - [4] Erin Abernethy - [10] Erin McCombs - [3] G. Warren - [8] Gerry Dinkins - [2] H. L. Jelks - [3] H.D.Beaupre - [16] H.L. Jelks - [1] I. Porto Hannes - [1] J - [3] J. Bernatis - [5] J. Dycus - [3] J. Ellis - [1] J. Johansen - [26] J. Landry - [1] J. Meador - [1] J. T. Garner - [4] J. Wisniewski - [12] J.D. Williams - [115] J.D. Williams and ACF Workshop participants - [2] J.D. Williams et al - [19] J.D. Williams et al. - [20] J.Simpson - [4] JDWilliams and Andy Hartzhog - [1] JDWilliams and S. Pursifull - [3] K. Harrington - [4] K. Herrington - [1] K. Herrington et al - [4] K.McKann - [4] L. Burlakova - [1] Lori J. Lewis - [1] MN - [3] Madill - [1] Mike Gangloff et al. - [3] N. A. Johnson - [3] N. Johnson - [40] N.A. Johnson - [1] N.Rooney - [4] Nathan Johnson - [27] P. Benton - [1] P. Kraska - [3] R. Salt - [3] R. Thomas - [1] Robert Aguilar - [5] S. Abbott - [1] S. Ahlstedt - [1] S. J. Walsh - [3] S. Percival - [3] S. Pursifull - [52] S.J. Walsh - [1] Scarlet Landry - [1] Travis Tuten - [5] V. Karatayev - [1] W.J. Birkhead et al - [2] Z. P. Martin - [3] Z.P. Martin - [1]
Specimen Identification:
Adam Frankowitz - [1] Andree D. Gendron - [2] BOLD ID Engine - [3] BOLD Identification System [] - [3] Gerald Sheppard - [2] Jayme E. Sones - [19] Jeremy deWaard - [1] Kareina L Dsouza - [1] Lyubov E. Burlakova - [1] Nathan A. Johnson - [213] Robert Aguilar - [5] Student - [1]