The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zhou X et al. The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life Philosophocal Transactions of the Royal Society B 2016-08-01;371(1702):25 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Zhou, Xin; Jacobus, Luke M.; DeWalt, R. Edward; Adamowicz, Sarah J.; Hebert, Paul D. N. The Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding Journal of the North American Benthological Society 2010-06-08;29(3):814-837 (PDF)
Xin Zhou, Sarah J Adamowicz, Luke M Jacobus, R Edward DeWalt and Paul DN Hebert Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada Frontiers in Zoology 2009-12-10;6(1):30 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [36]
United States - [27]
DATA MANAGERS:
Public Data:
Private Data:
Claudia Copley - [3] Derek S. Sikes - [2] David B Herbst - [1] Xin Zhou - [10] CBG Project Management Team - [20] Jeremy deWaard - [2] CBG Collections Unit - [3] Charles S Walker - [7] Kristy Deiner - [3] Paul B. Frandsen - [8]
Sara Okum - [2] David B Herbst - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
CSUTR156-10 {Onocosmoecus unicolor}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Brigham Young University, Monte L. Bean Museum of Life Science - [4]
Centre for Biodiversity Genomics - [21]
Colorado State University - [1]
Illinois Natural History Survey - [3]
Mined from GenBank, NCBI - [7]
Research Collection of Jeremy deWaard - [2]
Royal British Columbia Museum - [3]
Royal Ontario Museum - [3]
Sierra Streams Institute - [3]
United States Environmental Protection Agency - [2]
University of Alaska Museum - [2]
University of Minnesota - [4]
University of Minnesota Insect Collection - [8]
Sequencing Centers:
Centre for Biodiversity Genomics - [52] Eton Bioscience Inc. - [2]
Photography:
CBG Photography Group - [9] Frandsen Lab - [5] Jaclyn McCormick - [2] Jay Cossey - [1] Jessica Wicks, Taylor Probst - [2] Libby Avis - [2] Sarah Dykeman - [2] Taylor Kane - [2] Taylor Probst, Isaac Schirmer - [1]
Collectors:
BIObus 2008 - [1] BIObus 2010 - [2] C.Copley - [2] C.Shrimpton - [4] Craig M - [1] D. Huber and C. Shrimpton - [1] D.Copley - [1] D.Erasmus - [4] D.Holden - [1] D.Huber - [4] E. Hernandez - [1] Frandsen - [2] G.B.Wiggins & E.C.Wiggins - [1] Holz. Paprocki & Huisman - [4] Holzenthal - [2] Holzenthal & Huisman - [2] Holzenthal & Kjer - [1] J.Aker - [2] J.Heron - [1] J.R. - [2] J.S. Nordin - [1] J.Staniforth - [1] John Hudson - [2] K M - [1] Karl M. Kjer - [2] Kjer - [1] L.Blight - [1] Libby Avis - [2] M. M. Brown - [1] M. Pessino - [1] M.W. Hastriter - [1] Michael McGinnis - [8] Monica J - [1] Nelson - [2] P.Carrie - [1] P.D.N. Hebert - [1] R. E. DeWalt - [2] R.A.Cannings - [1] R.G.Bennett - [1] R.W. Baumann and S.M. Clark - [2] S.Davidson - [1] S.G.Cannings - [1] S.M. Clark - [1] SSI-UCSC - [1] deWaard - [2]
Specimen Identification:
Aynsley C. Thielman - [1] BOLD ID Engine - [1] BOLD Identification System [2019] - [2] BOLD Identification System [] - [14] Claire M Shrimpton - [1] David B Herbst - [3] David Ruiter - [5] John Hudson - [2] R. J. Blahnik - [2] R.W. Holzenthal - [2] Roger J. Blahnik - [11] Xin Zhou - [2]