The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [93]
Norway - [4]
United Kingdom - [15]
Italy - [15]
Germany - [17]
Denmark - [1]
Netherlands - [2]
United States - [2]
Austria - [7]
Czech Republic - [4]
Finland - [1]
Portugal - [12]
France - [8]
Montenegro - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [4] Jeremy deWaard - [16] Arild Johnsen - [2] CBG Project Management Team - [70] Paul D.N. Hebert - [5] Marko Mutanen - [3] Andreas Segerer - [4] Peter Huemer - [8] Camiel Doorenweerd - [2] Chris Looney - [1] Torbjorn Ekrem - [1] Axel Hausmann - [11] Stefan Schmidt - [1] Bjoern Rulik - [4] Martin Sigut - [4] Patrick Strutzenberger - [1] Scott E. Miller - [3] Sonia AF Ferreira - [4] Rodolphe Rougerie - [3] Wolfgang Stark - [1] Piotr Gadawski - [1] Carlos Lopez-Vaamonde - [2] Matthew P Besley - [1] CBG Collections Unit - [8]
Lyndall Pereira da Conceicoa - [9] May Bente Brurberg - [1] Reza Zahiri - [2] Stefano Scalercio - [5] Carlos Lopez-Vaamonde - [1] CBG Collections Unit - [1] Amelie Hoecherl - [1] Rodolphe Rougerie - [2]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [5]
Herbier du Museum National d'Histoire Naturelle, Paris - [1]
Museum National d'Histoire Naturelle de Paris, Provisional Research Collection - [1]
Museum national d'Histoire naturelle - [3]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [6]
Naturalis Biodiversity Center - [2]
Norwegian Institute for Agricultural and Environmental Research - [1]
Research Center in Biodiversity and Genetic Resources - [4]
Research Collection of Carlos Lopez Vaamonde - [3]
Research Collection of D. Holden - [4]
Research Collection of Jeremy deWaard - [5]
Research Collection of Kari Vaalamo - [1]
Research Collection of Richard Heindel - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [3]
SNSB, Zoologische Staatssammlung Muenchen - [16]
Smithsonian Institution, National Museum of Natural History - [3]
Tiroler Landesmuseum Ferdinandeum - [7]
University of Lodz, Department of Invertebrate Zoology and Hydrobiology - [1]
University of Oslo, Natural History Museum - [2]
University of Ostrava - [4]
University of Oulu - [1]
University of Oulu, Zoological Museum - [1]
University of Vienna, Dept of Botany and Biodiversity Research - [1]
Washington State Department of Agriculture - [1]
Wellcome Sanger Institute - [9]
Zoologisches Forschungsmuseum Alexander Koenig - [4]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [126] GATC Biotech AG - [1] Natural History Museum, London - [1] Naturalis Biodiversity Center - [2] University of Ostrava - [2] University of Vienna, Dept of Botany and Biodiversity Research - [1] Unknown - [1]
Photography:
Adrien Mathou - [4] Aina Maerk Aspaas - [1] Amelie Höcherl - [1] CBG Photography Group - [6] CBG Robotic Imager - [1] CBG Robotic Rig - [8] Carlos Lopez Vaamonde - [1] DNA barcoding facility - [2] Even Sannes Riiser - [2] G. Rotheneder - [1] Giuseppe Rijllo - [5] Jaclyn McCormick - [30] Jay Cossey - [2] Jean-Francois Landry - [4] Jeremy deWaard - [8] Jules Dessart-Pardon - [1] Libby Avis - [4] Lotta Mörch - [1] MY Chen - [3] Marko Mutanen - [1] Martin Sigut - [4] Mikko Pentinsaari - [1] Patrick Strutzenberger - [1] Peter Huemer - [1] Rodolphe Rougerie - [1] Sanger BIOSCAN Team - [5] Young-suk - [8] ZSM Hymenoptera Photography Group - [1] ZSM Photography Team - [1] kberggr@online.no - [1] photo work group Dr. Axel Hausmann - [4]
Collectors:
0-Unknown User - [1] A. - [8] A. Hausmann - [3] A. Hoecherl - [1] A. Li - [8] Aarvik - [1] Abigail Bailey - [1] Ana Rita Goncalves - [2] Andreas Segerer - [1] Andrzej Zawal - [1] BEN BROWN - [2] Baker Ellyn - [1] Benjamin Price - [1] C. Neumann - [1] Carlos Lopez Vaamonde - [3] Catalina Estrada Montes - [3] Christine Truxa - [1] Christy Wu - [3] D Holden - [4] D.Faser - [17] DION GARRETT - [2] David Hemprich-Bennett - [1] Deborah Beaumont - [1] Doorenweerd - [2] Dr David C. Lees - [1] Dr. Andreas H. Segerer - [2] Dr. D. Kolligs - [1] E.Jackh - [1] E.La Gasa - [1] Ferrari - [1] Franz Theimer - [1] G. Sellmayer - [1] GAC 0211 - [1] H. Hendriksen - [1] Harold Brenner - [1] Hausmann - [3] Holden D. - [2] Huemer P. - [8] J. Barbut & R. Rougerie - [1] J. Derhousoff - [8] J.-P. Kaitila - [1] J.F.G. Clarke - [1] Janet Mercer - [9] Joana P. Cristovao - [1] Jones Laura - [1] K. Ambil - [1] KELLY JOWETT - [2] Kai Berggren - [1] Kari Vaalamo - [1] L Mavin & M Young - [27] L. Ramsay - [17] L.Avis - [4] Leif - [1] Li - [8] Liam Crowley - [1] Lombardo - [1] Lowe Abigail - [1] M. Volf - [2] Martin Corley - [4] Michal Grabowski - [1] Neryse Mably - [1] P. Drozd - [2] Palombar - [2] Paul Harris - [1] Piotr Gadawski - [1] R.Avis - [4] RAB 91 - [1] Remy Wood - [1] Richard Heindel - [1] Rob Walker - [10] Rui Andrade - [2] Rulik et al - [4] S. Scalercio - [3] S.Ferreira - [6] SMP 391 - [1] SPC 112 - [1] Scalercio - [1] Sonia Ferreira - [3] Sverre Kobro - [1] Tomasz Mamos - [1] Tomasz Rewicz - [1] V. Gayk - [2] lgt. W.Stark - [1]
Specimen Identification:
Allison Brown - [5] Andreas Segerer - [3] Annchristin Dau - [1] Axel Hausmann - [10] BOLD Identification System [2020] - [1] BOLD Identification System [2023] - [3] BOLD Identification System [] - [23] BOLD Machine Learning Tool Kit - [5] Carlos Lopez-Vaamonde - [2] Chris Looney - [1] David Lees - [1] Detlef Kolligs - [1] E. Jackh - [1] Jayme E. Sones - [2] Jean-Francois Landry - [4] John Frederick Gates Clarke - [1] Kai Berggren - [1] Kari Vaalamo - [1] Leif Aarvik - [1] Leland M. Humble - [24] Libby Avis - [4] Marko Mutanen - [2] Martin Corley - [4] Martin Sigut - [4] Peter Huemer - [8] Reza Zahiri - [2] Richard Heindel - [1] Rodolphe Rougerie - [3] Sverre Kobro - [1] Thomas Huet - [1] USNM Curators - [1] Wolfgang Stark - [1] Wouter Moerland - [2]