The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Valdez-Moreno, M.
Ivanova, N.V.
Elias-Gutierrez, M.
Pedersen, S.L.
Bessonov, K.
Hebert, P.D.N. Using eDNA to biomonitor the fish community in a tropical oligotrophic lake Bacalar PlosOne 2019-04-22;14(4):e0215505 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Venezuela - [2]
Puerto Rico - [1]
Atlantic Ocean - [6]
Cuba - [5]
Belize - [8]
United States Virgin Islands - [2]
Barbados - [3]
Panama - [22]
United States - [1]
Trinidad and Tobago - [3]
Curacao - [9]
Mexico - [5]
Jamaica - [3]
Caribbean Sea - [1]
Bahamas - [2]
Dominica - [1]
Guadeloupe - [1]
DATA MANAGERS:
Public Data:
Private Data:
Lourdes Vasquez-Yeomans - [10] Charles S Walker - [2] Tyler Zemlak - [11] Amy C. Driskell - [14] Andrew C. Bentley - [2] Benjamin Victor - [9]
Amy C. Driskell - [23] Eliot M. A. Ruiz - [1] Thomas D Devine - [1] Oris Sanjur - [3]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
TZAIB315-06 {Ophioblennius macclurei}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
El Colegio de la Frontera Sur, Unidad Chetumal - [10]
Marine Biodiversity, Exploitation and Conservation - [1]
Mined from GenBank, NCBI - [2]
Research Collection of Benjamin Victor - [9]
Royal Ontario Museum - [11]
Smithsonian Institution - [12]
Smithsonian Institution, National Museum of Natural History - [26]
Smithsonian Tropical Research Institute - [3]
University of Kansas, Biodiversity Research Center - [2]
Sequencing Centers:
Centre for Biodiversity Genomics - [30] Smithsonian Institution - [6] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [32] Unknown - [3]
Photography:
Benjamin Victor - [1] CBG Photography Group - [11] Jose Angel Cohuo - [3] Selene Morales - [3]
Collectors:
Adriaan Schrier - [3] Amy Driskell - [2] Baldwin - [10] Benjamin Victor - [7] Bruce B: Thacker - [1] Bruce Brandt - [3] C. Baldwin - [4] Carole Baldwin - [5] Chase DeForest - [3] Christine - [1] Cristina Castillo - [1] D. Lang - [2] D. Smith - [4] Daniel Yanke - [11] Edward O - [1] Eliot RUIZ - [1] Estrella Malca - [1] Foltz - [1] Gildardo Alarcon Daowz - [1] Gonzales - [3] Henri Valles - [2] Ivan Castellanos Osorio - [3] J. Mounts - [4] Jeff T: Collette - [1] Jose Angel Cohuo Colli - [3] Kirk Johnson - [3] L. Lang - [2] L. Weigt - [4] Laura Carrillo Bibriezca - [8] Lee Weigt - [1] Lourdes Vasquez Yeomans - [3] Ross Robertson - [17] Smith - [9] Uriel Ordonez Lopez - [1] Weigt - [10] Wiley - [1] Williams - [1]
Specimen Identification:
Benjamin Victor - [6] Bruce B. Collette - [1] Carole C. Baldwin - [16] David G. Smith - [3] David ross Robertson - [17] Eliot Ruiz - [1] Jose Angel Cohuo Colli - [1] Lourdes Vasquez-Yeomans - [2] Selene Morales Gutierrez - [7]