The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
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Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
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Search Guidelines:
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If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [19]
Germany - [23]
Finland - [10]
Bulgaria - [1]
Austria - [13]
Croatia - [1]
Norway - [13]
Sweden - [1]
Italy - [4]
Czechia - [4]
Slovenia - [2]
DATA MANAGERS:
Public Data:
Private Data:
Marko Mutanen - [12] Charles S Walker - [1] Paul D.N. Hebert - [6] Andreas Segerer - [18] Peter Huemer - [13] Axel Hausmann - [5] Torbjorn Ekrem - [3] Stefan Schmidt - [1] Arild Johnsen - [3] Wolfgang Stark - [3] Ben W Price - [1] Matthew P Besley - [1] Jing V Leong - [4]
Thor H Ringsby - [7] Lyndall Pereira da Conceicoa - [11] Natalia Kirichenko - [2] Stefano Scalercio - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIE918-10 {Acleris hastiana}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Biology Centre of the Czech Academy of Sciences, Institute of Entomology - [4]
Centre for Biodiversity Genomics - [7]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [1]
NTNU University Museum, Department of Natural History - [3]
Natural History Museum, London - [8]
Research Collection of Alfred Haslberger - [4]
Research Collection of H. Karlsson - [1]
Research Collection of Jari-Pekka Kaitila - [1]
Research Collection of Kai Berggren - [3]
Research Collection of Peter Lichtmannecker - [1]
Research Collection of Richard Heindel - [2]
Research Collection of Stanislav Gomboc - [2]
Research Collection of Theo Gruenewald - [2]
Research Collection of Wolfgang Stark - [3]
SNSB, Zoologische Staatssammlung Muenchen - [15]
Tiroler Landesmuseum Ferdinandeum - [11]
University of Oulu, Zoological Museum - [10]
Wellcome Sanger Institute - [11]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [70]
Photography:
Erik Bostrom - [2] G. Rotheneder - [3] Giuseppe Rijllo - [1] H. Karlsson - [1] Helge Heimburg - [1] Hymenoptera Photo Group - [1] Jaclyn McCormick - [9] Jay Cossey - [2] Kai Berggren - [3] Kari Nupponen - [1] Lepidoptera photo group - [2] M. Volf - [4] Marko Mutanen - [2] Megan Swan - [3] Natalia Kirichenko, Stanislav Gomboc - [2] Peter Huemer - [1] Sanger BIOSCAN Team - [8] ZSM Hymenoptera Photography Group - [2] ZSM Photography Team - [5] photo work group Dr. Axel Hausmann - [3]
Collectors:
A. Hausmann - [2] A. Ludwig - [3] Adam HILLIER - [5] Alfred Haslberger - [4] Ali Karhu - [1] Andreas Werno - [2] Andreas `Karl` Stuebner - [1] Andrew BOARDMAN - [5] Barry Yates - [2] C. Seifert - [3] Carl Fredrik - [2] Ch. - [1] Charles R. Darwin - [1] Deutsch H. - [2] Doczkal - [1] Dr David C. Lees - [1] Dr. Alexander Miehr - [1] Dr. Andreas H. Segerer - [4] Dr. Theo Gruenewald - [2] E. Stur - [1] Elen Griffith - [2] Erica McAlister - [2] Finn HARRIGAN - [5] Francesca Anderson - [2] H. Karlsson - [1] Hausmann - [1] Helen Clark - [2] Huemer P. - [10] Infusino - [1] J-P. Kaitila - [1] J. Michalek - [1] J.V. Leong - [1] Jari Kaitila - [1] Jon Curson - [1] K. Aurova - [1] Kai Berggren - [2] Kai berggren - [1] Kirsty LOCKWOOD - [5] Luehr - [2] M. Volf - [4] MSP 76 - [1] Marko Mutanen - [7] Mr Mark Sterling - [1] P. Kaitila - [1] P. Kozel - [1] P. Mezzomo - [1] Panu Vaelimaeki - [4] Peter Lichtmannecker - [1] R. Engelmann - [3] RAB 188 - [1] RAB 195 - [1] Rainer Busse - [2] Rein-Arne Golf - [1] Richard Heindel - [2] Robin Barfoot - [1] Ron Moyes - [1] Ronni EDMONDS-BROWN - [5] Rudi Tannert - [1] S. Schmid & Voith - [1] SMP 451 - [1] Sam Buckland - [1] Scalercio - [1] Stanislav Gomboc - [2] Stuart Warrington - [1] T. Ekrem - [1] T. Holicova - [3] T. Volfova - [1] T.H. Ringsby and B.-E. Saether - [7] Tomi Mutanen - [1] Trevor DUBE - [5] V. Pokorny - [1] Wieser - [1] lgt. W.Stark - [3]
Specimen Identification:
Andreas Segerer - [17] Axel Hausmann - [5] BOLD Identification System [2022] - [3] BOLD Machine Learning Tool Kit - [4] Bengt A. Bengtsson - [1] Bold Sequence Classifier - [2] Christian Wieser - [1] David C. Lees - [1] Jari Kaitila - [1] Kaare H. Aagaard - [1] Kai Berggren - [9] Marko Mutanen - [10] Peter Huemer - [12] Richard Heindel - [2] Stanislav Gomboc - [2] Wolfgang Stark - [3]