The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Farinha, Ana; Dourado, Catarina G; Centeio, Neiva; Oliveira, Ana Rita; Dias, Deodalia; Rebelo, Maria Teresa Small bait traps as accurate predictors of dipteran early colonizers in forensic studies Journal of Insect Science 2014-05-30;14(77):16 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Erena Dupont, Thierry Backeljau, Marc de Meyer and Stijn Desmyter Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France ZooKeys 2013-12-30;365:307-328 (PDF)
Sikes, D.S., M. Bowser, J. M. Morton, C. Bickford, S. Meierotto, K. Hildebrandt. Building a DNA barcode library of Alaska’s non-marine arthropods Genome 2016-10-21;60(3):248-259 (PDF)
Vassileva, L.V., Lozanova, L., Marinov, M.P., Morinière, J., Neov, B., Nikolov, B.P., Simov, N., Klayn, S. Prey availability and diet composition of the Grey plover (Pluvialis squatarola) during migration on the South-Western Black Sea coast, Bulgaria Food Webs 2024-12-01;41(1):e00373 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
Carole Ames, Bryan Turner and Barbara Daniel The use of mitochondrial cytochrome oxidase I gene (COI) to differentiate two UK blowfly species -- Calliphora vicina and Calliphora vomitoria. Forensic Science International 2006-12-20;164(2-3):179-182 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United Kingdom - [22]
Canada - [64]
Finland - [3]
Pakistan - [3]
Portugal - [71]
Belgium - [17]
United States - [44]
Norway - [2]
Netherlands - [2]
Romania - [1]
Spain - [78]
France - [6]
Germany - [19]
China - [15]
Poland - [2]
Lebanon - [4]
Italy - [6]
Algeria - [12]
India - [4]
Austria - [2]
Bulgaria - [1]
Turkey - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [61] Derek S. Sikes - [16] Paul Marino - [1] Charles S Walker - [183] Jere Kahanpaa - [3] Eva S.A. Rolo - [12] Ana C.O. Farinha - [1] Gontran Sonet - [16] Stefan Schmidt - [9] Steffen Roth - [1] Terry L. Whitworth - [1] Torbjorn Ekrem - [1] Matt Bowser - [1] Sonia AF Ferreira - [4] Liliana V. Vassileva - [1] Claudia Copley - [3] Nikolaus U Szucsich - [1] CBG Collections Unit - [1] Matthew P Besley - [1]
Alberto AFL Fuentes lopez - [4] Oscar Vorst - [2] Jonathan B Reil - [15] Bjoern Rulik - [14] Atanu Naskar - [3] Jade Savage - [1] Stefan Schmidt - [2] Matthew P Besley - [1] Lyndall Pereira da Conceicoa - [8] CBG Collections Unit - [12] Drashti RAMESH Parmar - [1] Derek S. Sikes - [1] Charles S Walker - [12] Vikas Kumar - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
UAMU161-14 {Calliphora}
License:
CreativeCommons Attribution NonCommercial No Derivatives (2014)
Bulgarian Academy of Sciences, Institute of Biodiversity and Ecosystem Research - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [74]
Centre for Biodiversity Genomics, Informatics Department - [8]
Finnish Museum of Natural History, Zoological Museum - [3]
Kenai National Wildlife Refuge - [1]
Memorial University of Newfoundland - [1]
Mined from GenBank, NCBI - [189]
NTNU University Museum, Department of Natural History - [1]
National Institute of Criminalistics and Criminology, Belgium - [16]
Natural History Museum, London - [2]
Naturalis Biodiversity Center - [2]
Naturhistorisches Museum Wien - [1]
Nicolaus Copernicus University - [1]
Research Center in Biodiversity and Genetic Resources - [4]
Royal British Columbia Museum - [3]
SNSB, Zoologische Staatssammlung Muenchen - [11]
Universidad de Murcia - [4]
Universidade de Lisboa, Faculdade de Ciencias - [13]
University of Alaska Museum - [9]
University of Bergen, Natural History Collections - [1]
University of Hawaii Insect Museum - [5]
University of Hawaii at Manoa - [10]
Wellcome Sanger Institute - [8]
Zoological Survey of India - [4]
Zoologisches Forschungsmuseum Alexander Koenig - [14]
Sequencing Centers:
Beijing Genomics Institute - [14] Canadian Centre for DNA Barcoding - [11] Centre for Biodiversity Genomics - [84] Naturalis Biodiversity Center - [2] Royal Belgian Institute of Natural Sciences - [16] SNSB, Zoologische Staatssammlung Muenchen - [2]
Photography:
Alex Knapp - [6] CBG Photography Group - [6] CBG Robotic Imager - [1] CBG Robotic Rig - [12] Casey Bickford - [2] Hymenoptera Photo Group - [1] Jaclyn McCormick - [3] Jenni Moilanen - [2] Joshua Norby - [1] LifeScanner User - [20] Matt Bowser - [1] Megan Swan - [3] Naturalis DNA barcoding facility - [1] Piia Partanen - [1] Rick Turner - [10] Sanger BIOSCAN Team - [8] Sarah Meierotto - [3] Schoder - [2] St. Roth - [1] T.I. Tantawi - [1] UA Museum Entomology technician - [2]
Collectors:
Agnieszka Soszynska-Maj - [1] Alberto Fuentes-Lopez - [4] Ana C. O. Farinha - [1] Antti Haarto - [2] B. Maples - [2] B. Piercey - [1] B.Wijdeven - [1] BIOBus 2012 - [6] BIObus 2008 - [3] BIObus 2009 - [6] BIObus 2010 - [6] BIObus 2013 - [1] BIObus 2014 - [3] BR; CE - [5] BR; DH - [1] BR; MA - [3] BR; MA; DH - [1] Barb Maschke - [1] Belleuvre Nina - [2] Benjamin - [3] Benjamin Maples - [1] Brandt - [1] CBG Collections Staff - [3] Cameron Morrison - [2] Caroline Chimeno - [1] Cavan Harpur - [1] Claire Carvell - [7] D. - [2] D. Honsberger - [1] D.F. Gross - [1] Derek S. Sikes - [7] Doczkal - [2] Dr Gavin R. Broad - [1] Dr. Dhriti & team - [1] E. Stur - [1] Elizabeth Beks - [10] Ellie Grove - [7] Eva; Allinghman - [1] Evan Perry - [1] GBOL-Team ZFMK - [14] Gerard Pennards - [1] Hans Huijbregts - [1] Heidi Brown - [6] Horna Lowell - [1] J. - [2] J. Cossey - [1] J.B. Reil; C. Doorenweerd - [2] J.B. Reil; C. Elliott - [2] J.E. O`Hara - [1] Jennifer Van Bakel - [1] Jere Kahanpaeae - [1] Joel Gibson - [1] K.Greenham - [1] Kara Layton - [1] Kate R. Goodrich - [1] Korneyev - [3] Krzysztof Szpila - [1] L.Attard - [1] Labo MIC - [16] Lavinia Iancu - [1] Liliana V. Vassileva - [1] M. Akhtar - [1] M. Macary - [1] Martin Corley - [1] Matt Bowser - [1] Muhammad Rafique - [1] Nadine Mitschunas - [7] Naila Nazir Khan - [1] Nikolaus - [1] Oishik Kar - [2] Paul Hebert - [2] Penelope Whitehorn - [1] Peter Tarleton - [5] Podhorna J. et al. - [3] Podhorna et al. - [1] R.Reid - [1] Rachel - [1] Ray Scott - [1] Rikmyrprosjektet - [1] Rui Andrade - [4] S. & Voith - [2] S. Korneyev - [2] S.Cannings - [1] S.G.Cannings - [1] Schmidt - [2] Severyn Korneyev - [1] Severyn; Maples - [3] Sonia Ferreira - [1] Szucsich - [1] T. Ekrem - [1] Taylor Kane - [1] Terry L. Whitworth - [2] Thomas Zechmeister - [1] Tomislav Terzin - [8] Weary - [1] unknown - [2]
Specimen Identification:
Alberto AFL Fuentes lopez - [4] Ana C.O. Farinha - [1] Antti Haarto - [2] Atanu Naskar - [3] BOLD ID Engine - [10] BOLD Identification System [2017] - [2] BOLD Identification System [2018] - [1] BOLD Identification System [] - [14] BOLD Machine Learning Tool Kit - [1] Caroline Chimeno - [1] Derek S. Sikes - [2] Dieter Doczkal - [2] Gerard Pennards - [1] Hans Huijbregts - [1] Hans-Georg Rudzinski - [12] Jade Savage - [1] Jana Podhorna - [1] Jere Kahanpaa - [1] Jeremy deWaard - [3] Jerome Moriniere - [7] Jerome Moriniere Mobile - [1] Jonathan B Reil - [14] Krzysztof Szpila - [1] Luc Leblanc - [1] Matt Bowser - [1] Nikolaus U Szucsich - [1] Olga Sivell - [2] Rui Andrade - [4] Tarek I. Tantawi - [1] Terry L. Whitworth - [17] Tomislav Terzin - [6] Valerie Levesque-Beaudin - [6] Wolfgang Adaschkiewitz - [2] Yves Braet - [16]