The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Rachel Collin The effects of mode of development on phylogeography and population structure of North Atlantic Crepidula (Gastropoda: Calyptraeidae). Molecular Ecology 2001-09-01;10(9):2249-62
Andrea Barco, Michael Raupach, Silke Laakmann, Hermann Neumann, Thomas Knebelsberger Identification of North Sea molluscs with DNA barcoding Molecular Ecology Resources 2015-06-19 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
United States - [24]
Canada - [15]
North Sea - [7]
United Kingdom - [3]
France - [1]
Spain - [1]
DATA MANAGERS:
Public Data:
Private Data:
Gary Saunders - [6] Charles S Walker - [19] CBG Project Management Team - [2] Robert Aguilar - [7] Thomas Knebelsberger - [6] Student Portal Manager - [2] Joana Dias - [2] Christine Morrow - [1] Pedro Martinez Arbizu - [1] Ann M Evankow - [1]
Rebekka Uhl - [1] Robert Aguilar - [1] Christina M. Carr - [2]
Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [6]
Government of Western Australia, Dept of Fisheries - [1]
Marine Biological Association of the UK - [1]
Mined from GenBank, NCBI - [19]
Ocean Genome Legacy - [1]
Senckenberg Research Institute and Natural History Museum - [1]
Senckenberg am Meer Wilhelmshaven, Department German Centre for Marine Biodiversity Research - [1]
Smithsonian Institution, National Museum of Natural History - [8]
University of New Brunswick, Fredericton - [6]
University of New England - [2]
Western Australian Museum - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [5] Deutsches Zentrum fuer Marine Biodiversitaetsforschung - [6] Generic Commercial Labs - [2] Ocean Genome Legacy - [1] Senckenberg am Meer Wilhelmshaven, Department German Centre for Marine Biodiversity Research - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [8] University of New Brunswick, Centre for Environmental & Molecular Algal Research - [6]
Photography:
CEMAR Research Group - [6] Christina Carr - [4] D. Landry - [1] Kara Layton - [4] Ocean Genome Legacy - [1] Picton, B.E. - [2] Thomas Knebelsberger - [5]
Collectors:
Angela Cicia - [1] C. Carr - [2] C. Goodwin - [2] C. Landry - [1] Christine Morrow - [1] D. McDevit & N. Hawkins - [6] Frederique Viard with assistance of divers of the Marine Biological Station of Roscoff - [1] GWS - [6] Hermann Neumann - [3] K.Layton - [2] Mike Snow - [1] N.Jeffrey - [2] PBCB Bioblitz 2016 - [1] Patrick Adkins | Joanna Harley | Teresa Derbyshire | Anna Holmes - [1] Robert Aguilar - [2] Silke Laakmann - [3] VIMS Trawl Survey - [6]
Specimen Identification:
Ann M Evankow - [1] Christina M. Carr - [2] Christine Morrow - [1] Hermann Neumann - [1] Kara K. S. Layton - [2] N. Hawkins - [6] Robert Aguilar - [8] Seema Fotedar - [2] Student - [2] Thomas Knebelsberger - [6]